148 related articles for article (PubMed ID: 36889307)
1. Genes enriched in A/T-ending codons are co-regulated and conserved across mammals.
Benisty H; Hernandez-Alias X; Weber M; Anglada-Girotto M; Mantica F; Radusky L; Senger G; Calvet F; Weghorn D; Irimia M; Schaefer MH; Serrano L
Cell Syst; 2023 Apr; 14(4):312-323.e3. PubMed ID: 36889307
[TBL] [Abstract][Full Text] [Related]
2. Codon Usage Optimization in the Prokaryotic Tree of Life: How Synonymous Codons Are Differentially Selected in Sequence Domains with Different Expression Levels and Degrees of Conservation.
López JL; Lozano MJ; Fabre ML; Lagares A
mBio; 2020 Jul; 11(4):. PubMed ID: 32694138
[TBL] [Abstract][Full Text] [Related]
3. Evidence of multifaceted functions of codon usage in translation within the model beetle Tribolium castaneum.
Whittle CA; Kulkarni A; Extavour CG
DNA Res; 2019 Dec; 26(6):473-484. PubMed ID: 31922535
[TBL] [Abstract][Full Text] [Related]
4. Comparison of codon usage and tRNAs in mitochondrial genomes of Candida species.
Kamatani T; Yamamoto T
Biosystems; 2007; 90(2):362-70. PubMed ID: 17123703
[TBL] [Abstract][Full Text] [Related]
5. Mutation and selection on the anticodon of tRNA genes in vertebrate mitochondrial genomes.
Xia X
Gene; 2005 Jan; 345(1):13-20. PubMed ID: 15716092
[TBL] [Abstract][Full Text] [Related]
6. Synonymous codon usage pattern in mitochondrial CYB gene in pisces, aves, and mammals.
Uddin A; Chakraborty S
Mitochondrial DNA A DNA Mapp Seq Anal; 2017 Mar; 28(2):187-196. PubMed ID: 26634951
[TBL] [Abstract][Full Text] [Related]
7. Selection on synonymous codons in mammalian rhodopsins: a possible role in optimizing translational processes.
Du J; Dungan SZ; Sabouhanian A; Chang BS
BMC Evol Biol; 2014 May; 14():96. PubMed ID: 24884412
[TBL] [Abstract][Full Text] [Related]
8. Widespread position-specific conservation of synonymous rare codons within coding sequences.
Chaney JL; Steele A; Carmichael R; Rodriguez A; Specht AT; Ngo K; Li J; Emrich S; Clark PL
PLoS Comput Biol; 2017 May; 13(5):e1005531. PubMed ID: 28475588
[TBL] [Abstract][Full Text] [Related]
9. Codon usage bias in prokaryotic pyrimidine-ending codons is associated with the degeneracy of the encoded amino acids.
Wald N; Alroy M; Botzman M; Margalit H
Nucleic Acids Res; 2012 Aug; 40(15):7074-83. PubMed ID: 22581775
[TBL] [Abstract][Full Text] [Related]
10. A rare codon-based translational program of cell proliferation.
Guimaraes JC; Mittal N; Gnann A; Jedlinski D; Riba A; Buczak K; Schmidt A; Zavolan M
Genome Biol; 2020 Feb; 21(1):44. PubMed ID: 32102681
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide codon usage pattern analysis reveals the correlation between codon usage bias and gene expression in Cuscuta australis.
Liu XY; Li Y; Ji KK; Zhu J; Ling P; Zhou T; Fan LY; Xie SQ
Genomics; 2020 Jul; 112(4):2695-2702. PubMed ID: 32145379
[TBL] [Abstract][Full Text] [Related]
12. Codon usage of highly expressed genes affects proteome-wide translation efficiency.
Frumkin I; Lajoie MJ; Gregg CJ; Hornung G; Church GM; Pilpel Y
Proc Natl Acad Sci U S A; 2018 May; 115(21):E4940-E4949. PubMed ID: 29735666
[TBL] [Abstract][Full Text] [Related]
13. On the possible role of tRNA base modifications in the evolution of codon usage: queuosine and Drosophila.
Chiari Y; Dion K; Colborn J; Parmakelis A; Powell JR
J Mol Evol; 2010 Apr; 70(4):339-45. PubMed ID: 20333371
[TBL] [Abstract][Full Text] [Related]
14. Codon usage in the flatworm Schistosoma mansoni is shaped by the mutational bias towards A+T and translational selection, which increases GC-ending codons in highly expressed genes.
Lamolle G; Iriarte A; Musto H
Mol Biochem Parasitol; 2022 Jan; 247():111445. PubMed ID: 34942292
[TBL] [Abstract][Full Text] [Related]
15. Coevolution of codon usage and transfer RNA abundance.
Bulmer M
Nature; 1987 Feb 19-25; 325(6106):728-30. PubMed ID: 2434856
[TBL] [Abstract][Full Text] [Related]
16. Synonymous codon usage in Zea mays L. nuclear genes is varied by levels of C and G-ending codons.
Fennoy SL; Bailey-Serres J
Nucleic Acids Res; 1993 Nov; 21(23):5294-300. PubMed ID: 8265340
[TBL] [Abstract][Full Text] [Related]
17. Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis.
Kanaya S; Yamada Y; Kinouchi M; Kudo Y; Ikemura T
J Mol Evol; 2001; 53(4-5):290-8. PubMed ID: 11675589
[TBL] [Abstract][Full Text] [Related]
18. Looking into the genome of Thermosynechococcus elongatus (thermophilic cyanobacteria) with codon selection and usage perspective.
Prabha R; Singh DP; Rai A
Int J Bioinform Res Appl; 2015; 11(2):130-41. PubMed ID: 25786792
[TBL] [Abstract][Full Text] [Related]
19. Synonymous codon ordering: a subtle but prevalent strategy of bacteria to improve translational efficiency.
Shao ZQ; Zhang YM; Feng XY; Wang B; Chen JQ
PLoS One; 2012; 7(3):e33547. PubMed ID: 22432034
[TBL] [Abstract][Full Text] [Related]
20. Calculating and comparing codon usage values in rare disease genes highlights codon clustering with disease-and tissue- specific hierarchy.
Rossi R; Fang M; Zhu L; Jiang C; Yu C; Flesia C; Nie C; Li W; Ferlini A
PLoS One; 2022; 17(3):e0265469. PubMed ID: 35358230
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
