287 related articles for article (PubMed ID: 36895025)
1. Localized assembly for long reads enables genome-wide analysis of repetitive regions at single-base resolution in human genomes.
Ikemoto K; Fujimoto H; Fujimoto A
Hum Genomics; 2023 Mar; 17(1):21. PubMed ID: 36895025
[TBL] [Abstract][Full Text] [Related]
2. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
Goldstein S; Beka L; Graf J; Klassen JL
BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
[TBL] [Abstract][Full Text] [Related]
3. Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology.
Lemay MA; Sibbesen JA; Torkamaneh D; Hamel J; Levesque RC; Belzile F
BMC Biol; 2022 Feb; 20(1):53. PubMed ID: 35197050
[TBL] [Abstract][Full Text] [Related]
4. Genome assembly using Nanopore-guided long and error-free DNA reads.
Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
[TBL] [Abstract][Full Text] [Related]
5. Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer.
Fujimoto A; Wong JH; Yoshii Y; Akiyama S; Tanaka A; Yagi H; Shigemizu D; Nakagawa H; Mizokami M; Shimada M
Genome Med; 2021 Apr; 13(1):65. PubMed ID: 33910608
[TBL] [Abstract][Full Text] [Related]
6. HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.
Nurk S; Walenz BP; Rhie A; Vollger MR; Logsdon GA; Grothe R; Miga KH; Eichler EE; Phillippy AM; Koren S
Genome Res; 2020 Sep; 30(9):1291-1305. PubMed ID: 32801147
[TBL] [Abstract][Full Text] [Related]
7. Comprehensive identification of transposable element insertions using multiple sequencing technologies.
Chu C; Borges-Monroy R; Viswanadham VV; Lee S; Li H; Lee EA; Park PJ
Nat Commun; 2021 Jun; 12(1):3836. PubMed ID: 34158502
[TBL] [Abstract][Full Text] [Related]
8. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore.
Lang D; Zhang S; Ren P; Liang F; Sun Z; Meng G; Tan Y; Li X; Lai Q; Han L; Wang D; Hu F; Wang W; Liu S
Gigascience; 2020 Dec; 9(12):. PubMed ID: 33319909
[TBL] [Abstract][Full Text] [Related]
9. de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Istace B; Friedrich A; d'Agata L; Faye S; Payen E; Beluche O; Caradec C; Davidas S; Cruaud C; Liti G; Lemainque A; Engelen S; Wincker P; Schacherer J; Aury JM
Gigascience; 2017 Feb; 6(2):1-13. PubMed ID: 28369459
[TBL] [Abstract][Full Text] [Related]
10. A benchmark and an algorithm for detecting germline transposon insertions and measuring de novo transposon insertion frequencies.
Yu T; Huang X; Dou S; Tang X; Luo S; Theurkauf WE; Lu J; Weng Z
Nucleic Acids Res; 2021 May; 49(8):e44. PubMed ID: 33511407
[TBL] [Abstract][Full Text] [Related]
11. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.
Edge P; Bansal V
Nat Commun; 2019 Oct; 10(1):4660. PubMed ID: 31604920
[TBL] [Abstract][Full Text] [Related]
12. Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology.
Debladis E; Llauro C; Carpentier MC; Mirouze M; Panaud O
BMC Genomics; 2017 Jul; 18(1):537. PubMed ID: 28715998
[TBL] [Abstract][Full Text] [Related]
13. Sensitive alignment using paralogous sequence variants improves long-read mapping and variant calling in segmental duplications.
Prodanov T; Bansal V
Nucleic Acids Res; 2020 Nov; 48(19):e114. PubMed ID: 33035301
[TBL] [Abstract][Full Text] [Related]
14. Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements.
McCoy RC; Taylor RW; Blauwkamp TA; Kelley JL; Kertesz M; Pushkarev D; Petrov DA; Fiston-Lavier AS
PLoS One; 2014; 9(9):e106689. PubMed ID: 25188499
[TBL] [Abstract][Full Text] [Related]
15. Comparison of ONT and CCS sequencing technologies on the polyploid genome of a medicinal plant showed that high error rate of ONT reads are not suitable for self-correction.
Zeng P; Tian Z; Han Y; Zhang W; Zhou T; Peng Y; Hu H; Cai J
Chin Med; 2022 Aug; 17(1):94. PubMed ID: 35945546
[TBL] [Abstract][Full Text] [Related]
16. Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case.
Wang W; Schalamun M; Morales-Suarez A; Kainer D; Schwessinger B; Lanfear R
BMC Genomics; 2018 Dec; 19(1):977. PubMed ID: 30594129
[TBL] [Abstract][Full Text] [Related]
17. Nanopore sequencing and assembly of a human genome with ultra-long reads.
Jain M; Koren S; Miga KH; Quick J; Rand AC; Sasani TA; Tyson JR; Beggs AD; Dilthey AT; Fiddes IT; Malla S; Marriott H; Nieto T; O'Grady J; Olsen HE; Pedersen BS; Rhie A; Richardson H; Quinlan AR; Snutch TP; Tee L; Paten B; Phillippy AM; Simpson JT; Loman NJ; Loose M
Nat Biotechnol; 2018 Apr; 36(4):338-345. PubMed ID: 29431738
[TBL] [Abstract][Full Text] [Related]
18. Benchmarking multi-platform sequencing technologies for human genome assembly.
Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
[TBL] [Abstract][Full Text] [Related]
19. SVIM: structural variant identification using mapped long reads.
Heller D; Vingron M
Bioinformatics; 2019 Sep; 35(17):2907-2915. PubMed ID: 30668829
[TBL] [Abstract][Full Text] [Related]
20. NPGREAT: assembly of human subtelomere regions with the use of ultralong nanopore reads and linked-reads.
Adam E; Ranjan D; Riethman H
BMC Bioinformatics; 2022 Dec; 23(1):545. PubMed ID: 36526983
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
