These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

109 related articles for article (PubMed ID: 36897015)

  • 1. RNAget: an API to securely retrieve RNA quantifications.
    Upchurch S; Palumbo E; Adams J; Bujold D; Bourque G; Nedzel J; Graham K; Kagda MS; Assis P; Hitz B; Righi E; Guigó R; Wold BJ;
    Bioinformatics; 2023 Apr; 39(4):. PubMed ID: 36897015
    [TBL] [Abstract][Full Text] [Related]  

  • 2. htsget: a protocol for securely streaming genomic data.
    Kelleher J; Lin M; Albach CH; Birney E; Davies R; Gourtovaia M; Glazer D; Gonzalez CY; Jackson DK; Kemp A; Marshall J; Nowak A; Senf A; Tovar-Corona JM; Vikhorev A; Keane TM;
    Bioinformatics; 2019 Jan; 35(1):119-121. PubMed ID: 29931085
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Beacon v2 Reference Implementation: a toolkit to enable federated sharing of genomic and phenotypic data.
    Rueda M; Ariosa R; Moldes M; Rambla J
    Bioinformatics; 2022 Sep; 38(19):4656-4657. PubMed ID: 35980167
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The RNASeq-er API-a gateway to systematically updated analysis of public RNA-seq data.
    Petryszak R; Fonseca NA; Füllgrabe A; Huerta L; Keays M; Tang YA; Brazma A
    Bioinformatics; 2017 Jul; 33(14):2218-2220. PubMed ID: 28369191
    [TBL] [Abstract][Full Text] [Related]  

  • 5. piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.
    Han BW; Wang W; Zamore PD; Weng Z
    Bioinformatics; 2015 Feb; 31(4):593-5. PubMed ID: 25342065
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Refget: standardized access to reference sequences.
    Yates AD; Adams J; Chaturvedi S; Davies RM; Laird M; Leinonen R; Nag R; Sheffield NC; Hofmann O; Keane TM
    Bioinformatics; 2021 Dec; 38(1):299-300. PubMed ID: 34260694
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The barcode, UMI, set format and BUStools.
    Melsted P; Ntranos V; Pachter L
    Bioinformatics; 2019 Nov; 35(21):4472-4473. PubMed ID: 31073610
    [TBL] [Abstract][Full Text] [Related]  

  • 8. TPMCalculator: one-step software to quantify mRNA abundance of genomic features.
    Vera Alvarez R; Pongor LS; Mariño-Ramírez L; Landsman D
    Bioinformatics; 2019 Jun; 35(11):1960-1962. PubMed ID: 30379987
    [TBL] [Abstract][Full Text] [Related]  

  • 9. pyBedGraph: a python package for fast operations on 1D genomic signal tracks.
    Zhang HB; Kim M; Chuang JH; Ruan Y
    Bioinformatics; 2020 May; 36(10):3234-3235. PubMed ID: 32044918
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNA-Rocket: an RNA-Seq analysis resource for infectious disease research.
    Warren AS; Aurrecoechea C; Brunk B; Desai P; Emrich S; Giraldo-Calderón GI; Harb O; Hix D; Lawson D; Machi D; Mao C; McClelland M; Nordberg E; Shukla M; Vosshall LB; Wattam AR; Will R; Yoo HS; Sobral B
    Bioinformatics; 2015 May; 31(9):1496-8. PubMed ID: 25573919
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
    Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
    Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks.
    Pongor LS; Gross JM; Vera Alvarez R; Murai J; Jang SM; Zhang H; Redon C; Fu H; Huang SY; Thakur B; Baris A; Marino-Ramirez L; Landsman D; Aladjem MI; Pommier Y
    Epigenetics Chromatin; 2020 Apr; 13(1):21. PubMed ID: 32321568
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ClinGen advancing genomic data-sharing standards as a GA4GH driver project.
    Dolman L; Page A; Babb L; Freimuth RR; Arachchi H; Bizon C; Brush M; Fiume M; Haendel M; Hansen DP; Milosavljevic A; Patel RY; Pawliczek P; Yates AD; Rehm HL
    Hum Mutat; 2018 Nov; 39(11):1686-1689. PubMed ID: 30311379
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq.
    Liu R; Dickerson J
    PLoS Comput Biol; 2017 Nov; 13(11):e1005851. PubMed ID: 29176847
    [TBL] [Abstract][Full Text] [Related]  

  • 15. esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis.
    Wei Z; Zhang W; Fang H; Li Y; Wang X
    Bioinformatics; 2018 Aug; 34(15):2664-2665. PubMed ID: 29522192
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RepViz: a replicate-driven R tool for visualizing genomic regions.
    Faux T; Rytkönen KT; Laiho A; Elo LL
    BMC Res Notes; 2019 Jul; 12(1):441. PubMed ID: 31324268
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Isoform-level quantification for single-cell RNA sequencing.
    Pan L; Dinh HQ; Pawitan Y; Vu TN
    Bioinformatics; 2022 Feb; 38(5):1287-1294. PubMed ID: 34864849
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Platform-integrated mRNA isoform quantification.
    Sun J; Chang JW; Zhang T; Yong J; Kuang R; Zhang W
    Bioinformatics; 2020 Apr; 36(8):2466-2473. PubMed ID: 31834359
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DEBrowser: interactive differential expression analysis and visualization tool for count data.
    Kucukural A; Yukselen O; Ozata DM; Moore MJ; Garber M
    BMC Genomics; 2019 Jan; 20(1):6. PubMed ID: 30611200
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNA-SeQC 2: efficient RNA-seq quality control and quantification for large cohorts.
    Graubert A; Aguet F; Ravi A; Ardlie KG; Getz G
    Bioinformatics; 2021 Sep; 37(18):3048-3050. PubMed ID: 33677499
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.