201 related articles for article (PubMed ID: 36897885)
1. G4mismatch: Deep neural networks to predict G-quadruplex propensity based on G4-seq data.
Barshai M; Engel B; Haim I; Orenstein Y
PLoS Comput Biol; 2023 Mar; 19(3):e1010948. PubMed ID: 36897885
[TBL] [Abstract][Full Text] [Related]
2. G4detector: Convolutional Neural Network to Predict DNA G-Quadruplexes.
Barshai M; Aubert A; Orenstein Y
IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(4):1946-1955. PubMed ID: 33872156
[TBL] [Abstract][Full Text] [Related]
3. Re-evaluation of G-quadruplex propensity with G4Hunter.
Bedrat A; Lacroix L; Mergny JL
Nucleic Acids Res; 2016 Feb; 44(4):1746-59. PubMed ID: 26792894
[TBL] [Abstract][Full Text] [Related]
4. An overview on nucleic-acid G-quadruplex prediction: from rule-based methods to deep neural networks.
Elimelech-Zohar K; Orenstein Y
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37438149
[TBL] [Abstract][Full Text] [Related]
5. Using hidden Markov models to investigate G-quadruplex motifs in genomic sequences.
Yano M; Kato Y
BMC Genomics; 2014; 15 Suppl 9(Suppl 9):S15. PubMed ID: 25521044
[TBL] [Abstract][Full Text] [Related]
6. Machine learning model for sequence-driven DNA G-quadruplex formation.
Sahakyan AB; Chambers VS; Marsico G; Santner T; Di Antonio M; Balasubramanian S
Sci Rep; 2017 Nov; 7(1):14535. PubMed ID: 29109402
[TBL] [Abstract][Full Text] [Related]
7. G-Quadruplexes Involving Both Strands of Genomic DNA Are Highly Abundant and Colocalize with Functional Sites in the Human Genome.
Kudlicki AS
PLoS One; 2016; 11(1):e0146174. PubMed ID: 26727593
[TBL] [Abstract][Full Text] [Related]
8. Genomic landscape, polymorphism and possible LINE-associated delivery of G-quadruplex motifs in the bovine genes.
Stefos GC; Theodorou G; Politis I
Genomics; 2022 Mar; 114(2):110272. PubMed ID: 35092818
[TBL] [Abstract][Full Text] [Related]
9. DeepG4: A deep learning approach to predict cell-type specific active G-quadruplex regions.
Rocher V; Genais M; Nassereddine E; Mourad R
PLoS Comput Biol; 2021 Aug; 17(8):e1009308. PubMed ID: 34383754
[TBL] [Abstract][Full Text] [Related]
10. G-quadruplex DNA: A Longer Story.
Monsen RC; Trent JO; Chaires JB
Acc Chem Res; 2022 Nov; 55(22):3242-3252. PubMed ID: 36282946
[TBL] [Abstract][Full Text] [Related]
11. G-quadruplex nucleic acids and human disease.
Wu Y; Brosh RM
FEBS J; 2010 Sep; 277(17):3470-88. PubMed ID: 20670277
[TBL] [Abstract][Full Text] [Related]
12. The 3'-end region of the human PDGFR-β core promoter nuclease hypersensitive element forms a mixture of two unique end-insertion G-quadruplexes.
Onel B; Carver M; Agrawal P; Hurley LH; Yang D
Biochim Biophys Acta Gen Subj; 2018 Apr; 1862(4):846-854. PubMed ID: 29288770
[TBL] [Abstract][Full Text] [Related]
13. High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Chambers VS; Marsico G; Boutell JM; Di Antonio M; Smith GP; Balasubramanian S
Nat Biotechnol; 2015 Aug; 33(8):877-81. PubMed ID: 26192317
[TBL] [Abstract][Full Text] [Related]
14. TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome.
Jenjaroenpun P; Kuznetsov VA
BMC Genomics; 2009 Dec; 10 Suppl 3(Suppl 3):S9. PubMed ID: 19958507
[TBL] [Abstract][Full Text] [Related]
15. Genomic distribution and polymorphism of G-quadruplex motifs occupying ovine promoters and enhancers.
Stefos GC; Theodorou G; Politis I
Mamm Genome; 2023 Sep; 34(3):473-481. PubMed ID: 36964238
[TBL] [Abstract][Full Text] [Related]
16. In Vivo Chemical Probing for G-Quadruplex Formation.
Kouzine F; Wojtowicz D; Yamane A; Casellas R; Przytycka TM; Levens DL
Methods Mol Biol; 2019; 2035():369-382. PubMed ID: 31444763
[TBL] [Abstract][Full Text] [Related]
17. A guide to computational methods for G-quadruplex prediction.
Puig Lombardi E; Londoño-Vallejo A
Nucleic Acids Res; 2020 Jan; 48(1):1-15. PubMed ID: 31754698
[TBL] [Abstract][Full Text] [Related]
18. G-quadruplex structures are stable and detectable in human genomic DNA.
Lam EY; Beraldi D; Tannahill D; Balasubramanian S
Nat Commun; 2013; 4():1796. PubMed ID: 23653208
[TBL] [Abstract][Full Text] [Related]
19. G-Quadruplexes in the Archaea Domain.
Brázda V; Luo Y; Bartas M; Kaura P; Porubiaková O; Šťastný J; Pečinka P; Verga D; Da Cunha V; Takahashi TS; Forterre P; Myllykallio H; Fojta M; Mergny JL
Biomolecules; 2020 Sep; 10(9):. PubMed ID: 32967357
[TBL] [Abstract][Full Text] [Related]
20. Direct genome-wide identification of G-quadruplex structures by whole-genome resequencing.
Tu J; Duan M; Liu W; Lu N; Zhou Y; Sun X; Lu Z
Nat Commun; 2021 Oct; 12(1):6014. PubMed ID: 34650044
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]