339 related articles for article (PubMed ID: 36897969)
21. Formation of Chromosomal Domains by Loop Extrusion.
Fudenberg G; Imakaev M; Lu C; Goloborodko A; Abdennur N; Mirny LA
Cell Rep; 2016 May; 15(9):2038-49. PubMed ID: 27210764
[TBL] [Abstract][Full Text] [Related]
22. The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L; Pękowska A; Rao SSP; Kieffer-Kwon KR; Jung S; Baranello L; Huang SC; El Khattabi L; Dose M; Pruett N; Sanborn AL; Canela A; Maman Y; Oksanen A; Resch W; Li X; Lee B; Kovalchuk AL; Tang Z; Nelson S; Di Pierro M; Cheng RR; Machol I; St Hilaire BG; Durand NC; Shamim MS; Stamenova EK; Onuchic JN; Ruan Y; Nussenzweig A; Levens D; Aiden EL; Casellas R
Cell; 2018 May; 173(5):1165-1178.e20. PubMed ID: 29706548
[TBL] [Abstract][Full Text] [Related]
23. On the choreography of genome folding: A grand pas de deux of cohesin and CTCF.
van Ruiten MS; Rowland BD
Curr Opin Cell Biol; 2021 Jun; 70():84-90. PubMed ID: 33545664
[TBL] [Abstract][Full Text] [Related]
24. Co-depletion of NIPBL and WAPL balance cohesin activity to correct gene misexpression.
Luppino JM; Field A; Nguyen SC; Park DS; Shah PP; Abdill RJ; Lan Y; Yunker R; Jain R; Adelman K; Joyce EF
PLoS Genet; 2022 Nov; 18(11):e1010528. PubMed ID: 36449519
[TBL] [Abstract][Full Text] [Related]
25. Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF.
Aljahani A; Hua P; Karpinska MA; Quililan K; Davies JOJ; Oudelaar AM
Nat Commun; 2022 Apr; 13(1):2139. PubMed ID: 35440598
[TBL] [Abstract][Full Text] [Related]
26. Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A; Park M; Berger SE; Murphy SE; Nora EP; Boettiger AN
Mol Cell; 2023 May; 83(9):1377-1392.e6. PubMed ID: 37146570
[TBL] [Abstract][Full Text] [Related]
27. High-speed AFM imaging reveals DNA capture and loop extrusion dynamics by cohesin-NIPBL.
Kaur P; Lu X; Xu Q; Irvin EM; Pappas C; Zhang H; Finkelstein IJ; Shi Z; Tao YJ; Yu H; Wang H
J Biol Chem; 2023 Nov; 299(11):105296. PubMed ID: 37774974
[TBL] [Abstract][Full Text] [Related]
28. Activity-driven chromatin organization during interphase: Compaction, segregation, and entanglement suppression.
Chan B; Rubinstein M
Proc Natl Acad Sci U S A; 2024 May; 121(21):e2401494121. PubMed ID: 38753513
[TBL] [Abstract][Full Text] [Related]
29. Sensitivity of cohesin-chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion.
Golov AK; Golova AV; Gavrilov AA; Razin SV
Epigenetics Chromatin; 2021 Jul; 14(1):36. PubMed ID: 34321070
[TBL] [Abstract][Full Text] [Related]
30. Cohesin and CTCF complexes mediate contacts in chromatin loops depending on nucleosome positions.
Attou A; Zülske T; Wedemann G
Biophys J; 2022 Dec; 121(24):4788-4799. PubMed ID: 36325618
[TBL] [Abstract][Full Text] [Related]
31. NIPBL and cohesin: new take on a classic tale.
Alonso-Gil D; Losada A
Trends Cell Biol; 2023 Oct; 33(10):860-871. PubMed ID: 37062615
[TBL] [Abstract][Full Text] [Related]
32. Opposing Effects of Cohesin and Transcription on CTCF Organization Revealed by Super-resolution Imaging.
Gu B; Comerci CJ; McCarthy DG; Saurabh S; Moerner WE; Wysocka J
Mol Cell; 2020 Nov; 80(4):699-711.e7. PubMed ID: 33091336
[TBL] [Abstract][Full Text] [Related]
33. Cohesin is required for long-range enhancer action at the Shh locus.
Kane L; Williamson I; Flyamer IM; Kumar Y; Hill RE; Lettice LA; Bickmore WA
Nat Struct Mol Biol; 2022 Sep; 29(9):891-897. PubMed ID: 36097291
[TBL] [Abstract][Full Text] [Related]
34. Cohesin residency determines chromatin loop patterns.
Costantino L; Hsieh TS; Lamothe R; Darzacq X; Koshland D
Elife; 2020 Nov; 9():. PubMed ID: 33170773
[TBL] [Abstract][Full Text] [Related]
35. Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders.
Uusküla-Reimand L; Hou H; Samavarchi-Tehrani P; Rudan MV; Liang M; Medina-Rivera A; Mohammed H; Schmidt D; Schwalie P; Young EJ; Reimand J; Hadjur S; Gingras AC; Wilson MD
Genome Biol; 2016 Aug; 17(1):182. PubMed ID: 27582050
[TBL] [Abstract][Full Text] [Related]
36. Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.
Sanborn AL; Rao SS; Huang SC; Durand NC; Huntley MH; Jewett AI; Bochkov ID; Chinnappan D; Cutkosky A; Li J; Geeting KP; Gnirke A; Melnikov A; McKenna D; Stamenova EK; Lander ES; Aiden EL
Proc Natl Acad Sci U S A; 2015 Nov; 112(47):E6456-65. PubMed ID: 26499245
[TBL] [Abstract][Full Text] [Related]
37. Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils.
Jeppsson K; Pradhan B; Sutani T; Sakata T; Umeda Igarashi M; Berta DG; Kanno T; Nakato R; Shirahige K; Kim E; Björkegren C
Mol Cell; 2024 Mar; 84(5):867-882.e5. PubMed ID: 38295804
[TBL] [Abstract][Full Text] [Related]
38. CTCF and R-loops are boundaries of cohesin-mediated DNA looping.
Zhang H; Shi Z; Banigan EJ; Kim Y; Yu H; Bai XC; Finkelstein IJ
Mol Cell; 2023 Aug; 83(16):2856-2871.e8. PubMed ID: 37536339
[TBL] [Abstract][Full Text] [Related]
39. Cohesin-dependence of neuronal gene expression relates to chromatin loop length.
Calderon L; Weiss FD; Beagan JA; Oliveira MS; Georgieva R; Wang YF; Carroll TS; Dharmalingam G; Gong W; Tossell K; de Paola V; Whilding C; Ungless MA; Fisher AG; Phillips-Cremins JE; Merkenschlager M
Elife; 2022 Apr; 11():. PubMed ID: 35471149
[TBL] [Abstract][Full Text] [Related]
40. Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver.
Matthews BJ; Waxman DJ
Elife; 2018 May; 7():. PubMed ID: 29757144
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]