303 related articles for article (PubMed ID: 36935548)
1. CRMSNet: A deep learning model that uses convolution and residual multi-head self-attention block to predict RBPs for RNA sequence.
Pan Z; Zhou S; Zou H; Liu C; Zang M; Liu T; Wang Q
Proteins; 2023 Aug; 91(8):1032-1041. PubMed ID: 36935548
[TBL] [Abstract][Full Text] [Related]
2. WVDL: Weighted Voting Deep Learning Model for Predicting RNA-Protein Binding Sites.
Pan Z; Zhou S; Liu T; Liu C; Zang M; Wang Q
IEEE/ACM Trans Comput Biol Bioinform; 2023; 20(5):3322-3328. PubMed ID: 37028092
[TBL] [Abstract][Full Text] [Related]
3. Prediction of binding property of RNA-binding proteins using multi-sized filters and multi-modal deep convolutional neural network.
Chung T; Kim D
PLoS One; 2019; 14(4):e0216257. PubMed ID: 31026297
[TBL] [Abstract][Full Text] [Related]
4. MCNN: Multiple Convolutional Neural Networks for RNA-Protein Binding Sites Prediction.
Pan Z; Zhou S; Zou H; Liu C; Zang M; Liu T; Wang Q
IEEE/ACM Trans Comput Biol Bioinform; 2023; 20(2):1180-1187. PubMed ID: 35471886
[TBL] [Abstract][Full Text] [Related]
5. Prediction of RNA-protein sequence and structure binding preferences using deep convolutional and recurrent neural networks.
Pan X; Rijnbeek P; Yan J; Shen HB
BMC Genomics; 2018 Jul; 19(1):511. PubMed ID: 29970003
[TBL] [Abstract][Full Text] [Related]
6. DeepPN: a deep parallel neural network based on convolutional neural network and graph convolutional network for predicting RNA-protein binding sites.
Zhang J; Liu B; Wang Z; Lehnert K; Gahegan M
BMC Bioinformatics; 2022 Jun; 23(1):257. PubMed ID: 35768792
[TBL] [Abstract][Full Text] [Related]
7. RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach.
Pan X; Shen HB
BMC Bioinformatics; 2017 Feb; 18(1):136. PubMed ID: 28245811
[TBL] [Abstract][Full Text] [Related]
8. RNA-binding protein recognition based on multi-view deep feature and multi-label learning.
Yang H; Deng Z; Pan X; Shen HB; Choi KS; Wang L; Wang S; Wu J
Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32808039
[TBL] [Abstract][Full Text] [Related]
9. Deep-RBPPred: Predicting RNA binding proteins in the proteome scale based on deep learning.
Zheng J; Zhang X; Zhao X; Tong X; Hong X; Xie J; Liu S
Sci Rep; 2018 Oct; 8(1):15264. PubMed ID: 30323214
[TBL] [Abstract][Full Text] [Related]
10. DeepBtoD: Improved RNA-binding proteins prediction via integrated deep learning.
Du X; Zhao X; Zhang Y
J Bioinform Comput Biol; 2022 Aug; 20(4):2250006. PubMed ID: 35451938
[TBL] [Abstract][Full Text] [Related]
11. Predicting RNA-protein binding sites and motifs through combining local and global deep convolutional neural networks.
Pan X; Shen HB
Bioinformatics; 2018 Oct; 34(20):3427-3436. PubMed ID: 29722865
[TBL] [Abstract][Full Text] [Related]
12. Prediction of the RBP binding sites on lncRNAs using the high-order nucleotide encoding convolutional neural network.
Zhang SW; Wang Y; Zhang XX; Wang JQ
Anal Biochem; 2019 Oct; 583():113364. PubMed ID: 31323206
[TBL] [Abstract][Full Text] [Related]
13. Deep neural networks for inferring binding sites of RNA-binding proteins by using distributed representations of RNA primary sequence and secondary structure.
Deng L; Liu Y; Shi Y; Zhang W; Yang C; Liu H
BMC Genomics; 2020 Dec; 21(Suppl 13):866. PubMed ID: 33334313
[TBL] [Abstract][Full Text] [Related]
14. Recognizing binding sites of poorly characterized RNA-binding proteins on circular RNAs using attention Siamese network.
Wu H; Pan X; Yang Y; Shen HB
Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34297803
[TBL] [Abstract][Full Text] [Related]
15. circRNA-binding protein site prediction based on multi-view deep learning, subspace learning and multi-view classifier.
Li H; Deng Z; Yang H; Pan X; Wei Z; Shen HB; Choi KS; Wang L; Wang S; Wu J
Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34571539
[TBL] [Abstract][Full Text] [Related]
16. DeepA-RBPBS: A hybrid convolution and recurrent neural network combined with attention mechanism for predicting RBP binding site.
Du Z; Xiao X; Uversky VN
J Biomol Struct Dyn; 2022 Jun; 40(9):4250-4258. PubMed ID: 33272122
[TBL] [Abstract][Full Text] [Related]
17. econvRBP: Improved ensemble convolutional neural networks for RNA binding protein prediction directly from sequence.
Zhao Y; Du X
Methods; 2020 Oct; 181-182():15-23. PubMed ID: 31513916
[TBL] [Abstract][Full Text] [Related]
18. CRBPDL: Identification of circRNA-RBP interaction sites using an ensemble neural network approach.
Niu M; Zou Q; Lin C
PLoS Comput Biol; 2022 Jan; 18(1):e1009798. PubMed ID: 35051187
[TBL] [Abstract][Full Text] [Related]
19. iDRBP_MMC: Identifying DNA-Binding Proteins and RNA-Binding Proteins Based on Multi-Label Learning Model and Motif-Based Convolutional Neural Network.
Zhang J; Chen Q; Liu B
J Mol Biol; 2020 Nov; 432(22):5860-5875. PubMed ID: 32920048
[TBL] [Abstract][Full Text] [Related]
20. MAHyNet: Parallel Hybrid Network for RNA-Protein Binding Sites Prediction Based on Multi-Head Attention and Expectation Pooling.
Wang W; Sun Z; Liu D; Zhang H; Li J; Wang X; Zhou Y
IEEE/ACM Trans Comput Biol Bioinform; 2024; 21(3):416-427. PubMed ID: 38363672
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
