BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

224 related articles for article (PubMed ID: 36939021)

  • 1. Plastid Genome Assembly Using Long-read data.
    Zhou W; Armijos CE; Lee C; Lu R; Wang J; Ruhlman TA; Jansen RK; Jones AM; Jones CD
    Mol Ecol Resour; 2023 Aug; 23(6):1442-1457. PubMed ID: 36939021
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case.
    Wang W; Schalamun M; Morales-Suarez A; Kainer D; Schwessinger B; Lanfear R
    BMC Genomics; 2018 Dec; 19(1):977. PubMed ID: 30594129
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Unprecedented Intraindividual Structural Heteroplasmy in Eleocharis (Cyperaceae, Poales) Plastomes.
    Lee C; Ruhlman TA; Jansen RK
    Genome Biol Evol; 2020 May; 12(5):641-655. PubMed ID: 32282915
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Total duplication of the small single copy region in the angiosperm plastome: Rearrangement and inverted repeat instability in Asarum.
    Sinn BT; Sedmak DD; Kelly LM; Freudenstein JV
    Am J Bot; 2018 Jan; 105(1):71-84. PubMed ID: 29532923
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Extensive genomic rearrangements mediated by repetitive sequences in plastomes of Medicago and its relatives.
    Wu S; Chen J; Li Y; Liu A; Li A; Yin M; Shrestha N; Liu J; Ren G
    BMC Plant Biol; 2021 Sep; 21(1):421. PubMed ID: 34521343
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage.
    Guisinger MM; Kuehl JV; Boore JL; Jansen RK
    Mol Biol Evol; 2011 Jan; 28(1):583-600. PubMed ID: 20805190
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
    Hotaling S; Wilcox ER; Heckenhauer J; Stewart RJ; Frandsen PB
    BMC Genomics; 2023 Mar; 24(1):117. PubMed ID: 36927511
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome.
    Stadermann KB; Weisshaar B; Holtgräwe D
    BMC Bioinformatics; 2015 Sep; 16(1):295. PubMed ID: 26377912
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing.
    Scheunert A; Dorfner M; Lingl T; Oberprieler C
    PLoS One; 2020; 15(3):e0226234. PubMed ID: 32208422
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genome assembly using Nanopore-guided long and error-free DNA reads.
    Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
    BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Recombination-dependent replication and gene conversion homogenize repeat sequences and diversify plastid genome structure.
    Ruhlman TA; Zhang J; Blazier JC; Sabir JSM; Jansen RK
    Am J Bot; 2017 Apr; 104(4):559-572. PubMed ID: 28400415
    [TBL] [Abstract][Full Text] [Related]  

  • 12. HISEA: HIerarchical SEed Aligner for PacBio data.
    Khiste N; Ilie L
    BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ASAP: amplification, sequencing & annotation of plastomes.
    Dhingra A; Folta KM
    BMC Genomics; 2005 Dec; 6():176. PubMed ID: 16336644
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Extreme Reconfiguration of Plastid Genomes in Papaveraceae: Rearrangements, Gene Loss, Pseudogenization, IR Expansion, and Repeats.
    Cao J; Wang H; Cao Y; Kan S; Li J; Liu Y
    Int J Mol Sci; 2024 Feb; 25(4):. PubMed ID: 38396955
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
    Goldstein S; Beka L; Graf J; Klassen JL
    BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RepLong: de novo repeat identification using long read sequencing data.
    Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
    Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Plastid Genome of Seseli montanum: Complete Sequence and Comparison with Plastomes of Other Members of the Apiaceae Family.
    Samigullin TH; Logacheva MD; Terenteva EI; Degtjareva GV; Vallejo-Roman CM
    Biochemistry (Mosc); 2016 Sep; 81(9):981-5. PubMed ID: 27682170
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A pipeline for local assembly of minisatellite alleles from single-molecule sequencing data.
    Ogeh D; Badge R
    Bioinformatics; 2017 Mar; 33(5):650-653. PubMed ID: 27998939
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
    Wick RR; Judd LM; Gorrie CL; Holt KE
    PLoS Comput Biol; 2017 Jun; 13(6):e1005595. PubMed ID: 28594827
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family.
    Martin GE; Rousseau-Gueutin M; Cordonnier S; Lima O; Michon-Coudouel S; Naquin D; de Carvalho JF; Aïnouche M; Salmon A; Aïnouche A
    Ann Bot; 2014 Jun; 113(7):1197-210. PubMed ID: 24769537
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.