252 related articles for article (PubMed ID: 36949401)
1. Pickaxe: a Python library for the prediction of novel metabolic reactions.
Shebek KM; Strutz J; Broadbelt LJ; Tyo KEJ
BMC Bioinformatics; 2023 Mar; 24(1):106. PubMed ID: 36949401
[TBL] [Abstract][Full Text] [Related]
2. MINE 2.0: enhanced biochemical coverage for peak identification in untargeted metabolomics.
Strutz J; Shebek KM; Broadbelt LJ; Tyo KEJ
Bioinformatics; 2022 Jun; 38(13):3484-3487. PubMed ID: 35595247
[TBL] [Abstract][Full Text] [Related]
3. MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics.
Jeffryes JG; Colastani RL; Elbadawi-Sidhu M; Kind T; Niehaus TD; Broadbelt LJ; Hanson AD; Fiehn O; Tyo KE; Henry CS
J Cheminform; 2015; 7():44. PubMed ID: 26322134
[TBL] [Abstract][Full Text] [Related]
4. MetaboDirect: an analytical pipeline for the processing of FT-ICR MS-based metabolomic data.
Ayala-Ortiz C; Graf-Grachet N; Freire-Zapata V; Fudyma J; Hildebrand G; AminiTabrizi R; Howard-Varona C; Corilo YE; Hess N; Duhaime MB; Sullivan MB; Tfaily MM
Microbiome; 2023 Feb; 11(1):28. PubMed ID: 36803638
[TBL] [Abstract][Full Text] [Related]
5. SBbadger: biochemical reaction networks with definable degree distributions.
Kochen MA; Wiley HS; Feng S; Sauro HM
Bioinformatics; 2022 Nov; 38(22):5064-5072. PubMed ID: 36111865
[TBL] [Abstract][Full Text] [Related]
6. Genome-scale enzymatic reaction prediction by variational graph autoencoders.
Wang C; Yuan C; Wang Y; Chen R; Shi Y; Patti GJ; Hou Q
bioRxiv; 2023 Mar; ():. PubMed ID: 36945484
[TBL] [Abstract][Full Text] [Related]
7. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
[TBL] [Abstract][Full Text] [Related]
8. The nPYc-Toolbox, a Python module for the pre-processing, quality-control and analysis of metabolic profiling datasets.
Sands CJ; Wolfer AM; Correia GDS; Sadawi N; Ahmed A; Jiménez B; Lewis MR; Glen RC; Nicholson JK; Pearce JTM
Bioinformatics; 2019 Dec; 35(24):5359-5360. PubMed ID: 31350543
[TBL] [Abstract][Full Text] [Related]
9. CobraMod: a pathway-centric curation tool for constraint-based metabolic models.
Camborda S; Weder JN; Töpfer N
Bioinformatics; 2022 Apr; 38(9):2654-2656. PubMed ID: 35201291
[TBL] [Abstract][Full Text] [Related]
10. HOMELETTE: a unified interface to homology modelling software.
Junk P; Kiel C
Bioinformatics; 2022 Mar; 38(6):1749-1751. PubMed ID: 34954790
[TBL] [Abstract][Full Text] [Related]
11. PyHMMER: a Python library binding to HMMER for efficient sequence analysis.
Larralde M; Zeller G
Bioinformatics; 2023 May; 39(5):. PubMed ID: 37074928
[TBL] [Abstract][Full Text] [Related]
12. Chemical-damage MINE: A database of curated and predicted spontaneous metabolic reactions.
Jeffryes JG; Lerma-Ortiz C; Liu F; Golubev A; Niehaus TD; Elbadawi-Sidhu M; Fiehn O; Hanson AD; Tyo KE; Henry CS
Metab Eng; 2022 Jan; 69():302-312. PubMed ID: 34958914
[TBL] [Abstract][Full Text] [Related]
13. [A novel method for efficient screening and annotation of important pathway-associated metabolites based on the modified metabolome and probe molecules].
Li Z; Zheng F; Xia Y; Zhang X; Wang X; Zhao C; Zhao X; Lu X; Xu G
Se Pu; 2022 Sep; 40(9):788-796. PubMed ID: 36156625
[TBL] [Abstract][Full Text] [Related]
14. Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions.
Medlock GL; Moutinho TJ; Papin JA
PLoS Comput Biol; 2020 Apr; 16(4):e1007847. PubMed ID: 32348298
[TBL] [Abstract][Full Text] [Related]
15. Curating a comprehensive set of enzymatic reaction rules for efficient novel biosynthetic pathway design.
Ni Z; Stine AE; Tyo KEJ; Broadbelt LJ
Metab Eng; 2021 May; 65():79-87. PubMed ID: 33662575
[TBL] [Abstract][Full Text] [Related]
16. Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties.
Bergstrand LH; Neufeld JD; Doxey AC
Bioinformatics; 2019 Dec; 35(23):5063-5065. PubMed ID: 31240307
[TBL] [Abstract][Full Text] [Related]
17. Towards creating an extended metabolic model (EMM) for E. coli using enzyme promiscuity prediction and metabolomics data.
Amin SA; Chavez E; Porokhin V; Nair NU; Hassoun S
Microb Cell Fact; 2019 Jun; 18(1):109. PubMed ID: 31196115
[TBL] [Abstract][Full Text] [Related]
18. ARBRE: Computational resource to predict pathways towards industrially important aromatic compounds.
Sveshnikova A; MohammadiPeyhani H; Hatzimanikatis V
Metab Eng; 2022 Jul; 72():259-274. PubMed ID: 35381376
[TBL] [Abstract][Full Text] [Related]
19. LOCAN: a python library for analyzing single-molecule localization microscopy data.
Doose S
Bioinformatics; 2022 Apr; 38(9):2670-2672. PubMed ID: 35298593
[TBL] [Abstract][Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]