270 related articles for article (PubMed ID: 36959441)
21. Deep-learning contact-map guided protein structure prediction in CASP13.
Zheng W; Li Y; Zhang C; Pearce R; Mortuza SM; Zhang Y
Proteins; 2019 Dec; 87(12):1149-1164. PubMed ID: 31365149
[TBL] [Abstract][Full Text] [Related]
22. Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.
Yang J; Zhang W; He B; Walker SE; Zhang H; Govindarajoo B; Virtanen J; Xue Z; Shen HB; Zhang Y
Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):233-46. PubMed ID: 26343917
[TBL] [Abstract][Full Text] [Related]
23. Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12.
Zhang C; Mortuza SM; He B; Wang Y; Zhang Y
Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):136-151. PubMed ID: 29082551
[TBL] [Abstract][Full Text] [Related]
24. BioShell-Threading: versatile Monte Carlo package for protein 3D threading.
Gniewek P; Kolinski A; Kloczkowski A; Gront D
BMC Bioinformatics; 2014 Jan; 15():22. PubMed ID: 24444459
[TBL] [Abstract][Full Text] [Related]
25. CATHER: a novel threading algorithm with predicted contacts.
Du Z; Pan S; Wu Q; Peng Z; Yang J
Bioinformatics; 2020 Apr; 36(7):2119-2125. PubMed ID: 31790141
[TBL] [Abstract][Full Text] [Related]
26. I-TASSER: fully automated protein structure prediction in CASP8.
Zhang Y
Proteins; 2009; 77 Suppl 9(Suppl 9):100-13. PubMed ID: 19768687
[TBL] [Abstract][Full Text] [Related]
27. Protein structure prediction using deep learning distance and hydrogen-bonding restraints in CASP14.
Zheng W; Li Y; Zhang C; Zhou X; Pearce R; Bell EW; Huang X; Zhang Y
Proteins; 2021 Dec; 89(12):1734-1751. PubMed ID: 34331351
[TBL] [Abstract][Full Text] [Related]
28. Analysis of distance-based protein structure prediction by deep learning in CASP13.
Xu J; Wang S
Proteins; 2019 Dec; 87(12):1069-1081. PubMed ID: 31471916
[TBL] [Abstract][Full Text] [Related]
29. Recent advances in sequence-based protein structure prediction.
Kc DB
Brief Bioinform; 2017 Nov; 18(6):1021-1032. PubMed ID: 27562963
[TBL] [Abstract][Full Text] [Related]
30. Four-body contact potentials derived from two protein datasets to discriminate native structures from decoys.
Feng Y; Kloczkowski A; Jernigan RL
Proteins; 2007 Jul; 68(1):57-66. PubMed ID: 17393455
[TBL] [Abstract][Full Text] [Related]
31. Protein threading using PROSPECT: design and evaluation.
Xu Y; Xu D
Proteins; 2000 Aug; 40(3):343-54. PubMed ID: 10861926
[TBL] [Abstract][Full Text] [Related]
32. EigenTHREADER: analogous protein fold recognition by efficient contact map threading.
Buchan DWA; Jones DT
Bioinformatics; 2017 Sep; 33(17):2684-2690. PubMed ID: 28419258
[TBL] [Abstract][Full Text] [Related]
33. Protein threading by linear programming.
Xu J; Li M; Lin G; Kim D; Xu Y
Pac Symp Biocomput; 2003; ():264-75. PubMed ID: 12603034
[TBL] [Abstract][Full Text] [Related]
34. A new approach to prediction of short-range conformational propensities in proteins.
Gront D; Kolinski A
Bioinformatics; 2005 Apr; 21(7):981-7. PubMed ID: 15509604
[TBL] [Abstract][Full Text] [Related]
35. Homology Modeling in the Twilight Zone: Improved Accuracy by Sequence Space Analysis.
Ben Boubaker R; Tiss A; Henrion D; Chabbert M
Methods Mol Biol; 2023; 2627():1-23. PubMed ID: 36959439
[TBL] [Abstract][Full Text] [Related]
36. A historical perspective of template-based protein structure prediction.
Guo JT; Ellrott K; Xu Y
Methods Mol Biol; 2008; 413():3-42. PubMed ID: 18075160
[TBL] [Abstract][Full Text] [Related]
37. RAPTOR: optimal protein threading by linear programming.
Xu J; Li M; Kim D; Xu Y
J Bioinform Comput Biol; 2003 Apr; 1(1):95-117. PubMed ID: 15290783
[TBL] [Abstract][Full Text] [Related]
38. A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments.
Abriata LA; Tamò GE; Dal Peraro M
Proteins; 2019 Dec; 87(12):1100-1112. PubMed ID: 31344267
[TBL] [Abstract][Full Text] [Related]
39. Deep Learning-Based Advances in Protein Structure Prediction.
Pakhrin SC; Shrestha B; Adhikari B; Kc DB
Int J Mol Sci; 2021 May; 22(11):. PubMed ID: 34074028
[TBL] [Abstract][Full Text] [Related]
40. Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.
Walsh I; Baù D; Martin AJ; Mooney C; Vullo A; Pollastri G
BMC Struct Biol; 2009 Jan; 9():5. PubMed ID: 19183478
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]