149 related articles for article (PubMed ID: 36961334)
1. Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICs.
Lindegger J; Senol Cali D; Alser M; Gómez-Luna J; Ghiasi NM; Mutlu O
Bioinformatics; 2023 May; 39(5):. PubMed ID: 36961334
[TBL] [Abstract][Full Text] [Related]
2. SneakySnake: a fast and accurate universal genome pre-alignment filter for CPUs, GPUs and FPGAs.
Alser M; Shahroodi T; Gómez-Luna J; Alkan C; Mutlu O
Bioinformatics; 2021 Apr; 36(22-23):5282-5290. PubMed ID: 33315064
[TBL] [Abstract][Full Text] [Related]
3. WFA-GPU: gap-affine pairwise read-alignment using GPUs.
Aguado-Puig Q; Doblas M; Matzoros C; Espinosa A; Moure JC; Marco-Sola S; Moreto M
Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 37975878
[TBL] [Abstract][Full Text] [Related]
4. GPU acceleration of Darwin read overlapper for de novo assembly of long DNA reads.
Ahmed N; Qiu TD; Bertels K; Al-Ars Z
BMC Bioinformatics; 2020 Sep; 21(Suppl 13):388. PubMed ID: 32938392
[TBL] [Abstract][Full Text] [Related]
5. Arioc: High-concurrency short-read alignment on multiple GPUs.
Wilton R; Szalay AS
PLoS Comput Biol; 2020 Nov; 16(11):e1008383. PubMed ID: 33166275
[TBL] [Abstract][Full Text] [Related]
6. Accelerating BWA-MEM Read Mapping on GPUs.
Pham M; Tu Y; Lv X
ICS; 2023 Jun; 2023():155-166. PubMed ID: 37584044
[TBL] [Abstract][Full Text] [Related]
7. A nonvoxel-based dose convolution/superposition algorithm optimized for scalable GPU architectures.
Neylon J; Sheng K; Yu V; Chen Q; Low DA; Kupelian P; Santhanam A
Med Phys; 2014 Oct; 41(10):101711. PubMed ID: 25281950
[TBL] [Abstract][Full Text] [Related]
8. Efficient methods for implementation of multi-level nonrigid mass-preserving image registration on GPUs and multi-threaded CPUs.
Ellingwood ND; Yin Y; Smith M; Lin CL
Comput Methods Programs Biomed; 2016 Apr; 127():290-300. PubMed ID: 26776541
[TBL] [Abstract][Full Text] [Related]
9. Shouji: a fast and efficient pre-alignment filter for sequence alignment.
Alser M; Hassan H; Kumar A; Mutlu O; Alkan C
Bioinformatics; 2019 Nov; 35(21):4255-4263. PubMed ID: 30923804
[TBL] [Abstract][Full Text] [Related]
10. Many-core algorithms for high-dimensional gradients on phylogenetic trees.
Gangavarapu K; Ji X; Baele G; Fourment M; Lemey P; Matsen FA; Suchard MA
Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38243701
[TBL] [Abstract][Full Text] [Related]
11. Exploiting graphics processing units for computational biology and bioinformatics.
Payne JL; Sinnott-Armstrong NA; Moore JH
Interdiscip Sci; 2010 Sep; 2(3):213-20. PubMed ID: 20658333
[TBL] [Abstract][Full Text] [Related]
12. CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment.
Chen X; Wang C; Tang S; Yu C; Zou Q
BMC Bioinformatics; 2017 Jun; 18(1):315. PubMed ID: 28646874
[TBL] [Abstract][Full Text] [Related]
13. H-BLAST: a fast protein sequence alignment toolkit on heterogeneous computers with GPUs.
Ye W; Chen Y; Zhang Y; Xu Y
Bioinformatics; 2017 Apr; 33(8):1130-1138. PubMed ID: 28087515
[TBL] [Abstract][Full Text] [Related]
14. Fast Equi-Join Algorithms on GPUs: Design and Implementation.
Rui R; Tu YC
Sci Stat Database Manag; 2017 Jun; 2017():. PubMed ID: 38298773
[TBL] [Abstract][Full Text] [Related]
15. GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis.
Gamaarachchi H; Lam CW; Jayatilaka G; Samarakoon H; Simpson JT; Smith MA; Parameswaran S
BMC Bioinformatics; 2020 Aug; 21(1):343. PubMed ID: 32758139
[TBL] [Abstract][Full Text] [Related]
16. Accelerating Minimap2 for Accurate Long Read Alignment on GPUs.
Sadasivan H; Maric M; Dawson E; Iyer V; Israeli J; Narayanasamy S
J Biotechnol Biomed; 2023; 6(1):13-23. PubMed ID: 36937168
[TBL] [Abstract][Full Text] [Related]
17. Comparing performance of many-core CPUs and GPUs for static and motion compensated reconstruction of C-arm CT data.
Hofmann HG; Keck B; Rohkohl C; Hornegger J
Med Phys; 2011 Jan; 38(1):468-73. PubMed ID: 21361215
[TBL] [Abstract][Full Text] [Related]
18. BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures.
Zhang J; Lan H; Chan Y; Shang Y; Schmidt B; Liu W
Bioinformatics; 2019 Jul; 35(13):2306-2308. PubMed ID: 30445566
[TBL] [Abstract][Full Text] [Related]
19. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
Wilton R; Li X; Feinberg AP; Szalay AS
Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
[TBL] [Abstract][Full Text] [Related]
20. ADEPT: a domain independent sequence alignment strategy for gpu architectures.
Awan MG; Deslippe J; Buluc A; Selvitopi O; Hofmeyr S; Oliker L; Yelick K
BMC Bioinformatics; 2020 Sep; 21(1):406. PubMed ID: 32933482
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]