BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 36971110)

  • 1. DNA supercoiling-induced shapes alter minicircle hydrodynamic properties.
    Waszkiewicz R; Ranasinghe M; Fogg JM; Catanese DJ; Ekiel-Jeżewska ML; Lisicki M; Demeler B; Zechiedrich L; Szymczak P
    Nucleic Acids Res; 2023 May; 51(8):4027-4042. PubMed ID: 36971110
    [TBL] [Abstract][Full Text] [Related]  

  • 2. DNA supercoiling-induced shapes alter minicircle hydrodynamic properties.
    Waszkiewicz R; Ranasinghe M; Fogg JM; Catanese DJ; Ekiel-Jeżewska ML; Lisicki M; Demeler B; Zechiedrich L; Szymczak P
    bioRxiv; 2023 Jan; ():. PubMed ID: 36711572
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Supercoiling and looping promote DNA base accessibility and coordination among distant sites.
    Fogg JM; Judge AK; Stricker E; Chan HL; Zechiedrich L
    Nat Commun; 2021 Sep; 12(1):5683. PubMed ID: 34584096
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Coarse-grained modeling reveals the impact of supercoiling and loop length in DNA looping kinetics.
    Starr CH; Bryant Z; Spakowitz AJ
    Biophys J; 2022 May; 121(10):1949-1962. PubMed ID: 35421389
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Suitability of double-stranded DNA as a molecular standard for the validation of analytical ultracentrifugation instruments.
    Ranasinghe M; Fogg JM; Catanese DJ; Zechiedrich L; Demeler B
    Eur Biophys J; 2023 Jul; 52(4-5):267-280. PubMed ID: 37501021
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DNA supercoiling changes the spacing requirement of two lac operators for DNA loop formation with lac repressor.
    Krämer H; Amouyal M; Nordheim A; Müller-Hill B
    EMBO J; 1988 Feb; 7(2):547-56. PubMed ID: 2835234
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Large-Scale Conformational Transitions in Supercoiled DNA Revealed by Coarse-Grained Simulation.
    Krajina BA; Spakowitz AJ
    Biophys J; 2016 Oct; 111(7):1339-1349. PubMed ID: 27705758
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structural diversity of supercoiled DNA.
    Irobalieva RN; Fogg JM; Catanese DJ; Sutthibutpong T; Chen M; Barker AK; Ludtke SJ; Harris SA; Schmid MF; Chiu W; Zechiedrich L
    Nat Commun; 2015 Oct; 6():8440. PubMed ID: 26455586
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DNA supercoiling: a regulatory signal for the λ repressor.
    Ding Y; Manzo C; Fulcrand G; Leng F; Dunlap D; Finzi L
    Proc Natl Acad Sci U S A; 2014 Oct; 111(43):15402-7. PubMed ID: 25319264
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Atomistic Molecular Dynamics Simulations of DNA Minicircle Topoisomers: A Practical Guide to Setup, Performance, and Analysis.
    Sutthibutpong T; Noy A; Harris S
    Methods Mol Biol; 2016; 1431():195-219. PubMed ID: 27283311
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling.
    Benedetti F; Japaridze A; Dorier J; Racko D; Kwapich R; Burnier Y; Dietler G; Stasiak A
    Nucleic Acids Res; 2015 Feb; 43(4):2390-9. PubMed ID: 25653164
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Positive supercoiling favors transcription elongation through lac repressor-mediated DNA loops.
    Xu W; Yan Y; Artsimovitch I; Dunlap D; Finzi L
    Nucleic Acids Res; 2022 Mar; 50(5):2826-2835. PubMed ID: 35188572
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Monte Carlo implementation of supercoiled double-stranded DNA.
    Yang Z; Haijun Z; Zhong-Can OY
    Biophys J; 2000 Apr; 78(4):1979-87. PubMed ID: 10733976
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Effects of RNA polymerase modifications on transcription-induced negative supercoiling and associated R-loop formation.
    Broccoli S; Rallu F; Sanscartier P; Cerritelli SM; Crouch RJ; Drolet M
    Mol Microbiol; 2004 Jun; 52(6):1769-79. PubMed ID: 15186424
    [TBL] [Abstract][Full Text] [Related]  

  • 15. lac repressor forms stable loops in vitro with supercoiled wild-type lac DNA containing all three natural lac operators.
    Eismann ER; Müller-Hill B
    J Mol Biol; 1990 Jun; 213(4):763-75. PubMed ID: 2359123
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The absence of supercoiling in kinetoplast DNA minicircles.
    Rauch CA; Perez-Morga D; Cozzarelli NR; Englund PT
    EMBO J; 1993 Feb; 12(2):403-11. PubMed ID: 8382606
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Supercoiling-dependent flexibility of adenosine-tract-containing DNA detected by a topological method.
    Tsen H; Levene SD
    Proc Natl Acad Sci U S A; 1997 Apr; 94(7):2817-22. PubMed ID: 9096303
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Distribution of torsional stress between the un-replicated and replicated regions in partially replicated molecules.
    Martínez V; Schaerer C; Hernández P; Krimer DB; Schvartzman JB; Fernández-Nestosa MJ
    J Biomol Struct Dyn; 2021 Apr; 39(6):2266-2277. PubMed ID: 32238092
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Topoisomer gel retardation: detection of anti-Z-DNA antibodies bound to Z-DNA within supercoiled DNA minicircles.
    Nordheim A; Meese K
    Nucleic Acids Res; 1988 Jan; 16(1):21-37. PubMed ID: 3340525
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Internal motion of supercoiled DNA: brownian dynamics simulations of site juxtaposition.
    Jian H; Schlick T; Vologodskii A
    J Mol Biol; 1998 Nov; 284(2):287-96. PubMed ID: 9813118
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.