BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 36971586)

  • 1. A framework for high-throughput sequence alignment using real processing-in-memory systems.
    Diab S; Nassereldine A; Alser M; Gómez Luna J; Mutlu O; El Hajj I
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 36971586
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Fast gap-affine pairwise alignment using the wavefront algorithm.
    Marco-Sola S; Moure JC; Moreto M; Espinosa A
    Bioinformatics; 2021 May; 37(4):456-463. PubMed ID: 32915952
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.
    Alser M; Hassan H; Xin H; Ergin O; Mutlu O; Alkan C
    Bioinformatics; 2017 Nov; 33(21):3355-3363. PubMed ID: 28575161
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.
    Kim JS; Senol Cali D; Xin H; Lee D; Ghose S; Alser M; Hassan H; Ergin O; Alkan C; Mutlu O
    BMC Genomics; 2018 May; 19(Suppl 2):89. PubMed ID: 29764378
    [TBL] [Abstract][Full Text] [Related]  

  • 5. WFA-GPU: gap-affine pairwise read-alignment using GPUs.
    Aguado-Puig Q; Doblas M; Matzoros C; Espinosa A; Moure JC; Marco-Sola S; Moreto M
    Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 37975878
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RandAL: a randomized approach to aligning DNA sequences to reference genomes.
    Vo NS; Tran Q; Niraula N; Phan V
    BMC Genomics; 2014; 15 Suppl 5(Suppl 5):S2. PubMed ID: 25081493
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment.
    Chen X; Wang C; Tang S; Yu C; Zou Q
    BMC Bioinformatics; 2017 Jun; 18(1):315. PubMed ID: 28646874
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

  • 9. BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures.
    Zhang J; Lan H; Chan Y; Shang Y; Schmidt B; Liu W
    Bioinformatics; 2019 Jul; 35(13):2306-2308. PubMed ID: 30445566
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Optimal gap-affine alignment in O(s) space.
    Marco-Sola S; Eizenga JM; Guarracino A; Paten B; Garrison E; Moreto M
    Bioinformatics; 2023 Feb; 39(2):. PubMed ID: 36749013
    [TBL] [Abstract][Full Text] [Related]  

  • 11. LAMSA: fast split read alignment with long approximate matches.
    Liu B; Gao Y; Wang Y
    Bioinformatics; 2017 Jan; 33(2):192-201. PubMed ID: 27667793
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Shouji: a fast and efficient pre-alignment filter for sequence alignment.
    Alser M; Hassan H; Kumar A; Mutlu O; Alkan C
    Bioinformatics; 2019 Nov; 35(21):4255-4263. PubMed ID: 30923804
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data.
    Ahmed N; Lévy J; Ren S; Mushtaq H; Bertels K; Al-Ars Z
    BMC Bioinformatics; 2019 Oct; 20(1):520. PubMed ID: 31653208
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Accelerating spliced alignment of long RNA sequencing reads using parallel maximal exact match retrieval.
    Wang R; Zhang Y
    Comput Biol Med; 2024 Jun; 175():108542. PubMed ID: 38714048
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MinimapR: A parallel alignment tool for the analysis of large-scale third-generation sequencing data.
    Wang Z; Cui Y; Peng S; Liao X; Yu Y
    Comput Biol Chem; 2022 Aug; 99():107735. PubMed ID: 35850048
    [TBL] [Abstract][Full Text] [Related]  

  • 16. BWA-MEME: BWA-MEM emulated with a machine learning approach.
    Jung Y; Han D
    Bioinformatics; 2022 Apr; 38(9):2404-2413. PubMed ID: 35253835
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PASTASpark: multiple sequence alignment meets Big Data.
    Abuín JM; Pena TF; Pichel JC
    Bioinformatics; 2017 Sep; 33(18):2948-2950. PubMed ID: 28582480
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Arioc: High-concurrency short-read alignment on multiple GPUs.
    Wilton R; Szalay AS
    PLoS Comput Biol; 2020 Nov; 16(11):e1008383. PubMed ID: 33166275
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment.
    Yeh CC; Amorosi CJ; Showman S; Dunham MJ
    Bioinformatics; 2022 May; 38(10):2927-2929. PubMed ID: 35561209
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Strobealign: flexible seed size enables ultra-fast and accurate read alignment.
    Sahlin K
    Genome Biol; 2022 Dec; 23(1):260. PubMed ID: 36522758
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.