BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

169 related articles for article (PubMed ID: 36972309)

  • 1. Rhometa: Population recombination rate estimation from metagenomic read datasets.
    Krishnan S; DeMaere MZ; Beck D; Ostrowski M; Seymour JR; Darling AE
    PLoS Genet; 2023 Mar; 19(3):e1010683. PubMed ID: 36972309
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.
    Wang Z; Wang Y; Fuhrman JA; Sun F; Zhu S
    Brief Bioinform; 2020 May; 21(3):777-790. PubMed ID: 30860572
    [TBL] [Abstract][Full Text] [Related]  

  • 3. OGRE: Overlap Graph-based metagenomic Read clustEring.
    Balvert M; Luo X; Hauptfeld E; Schönhuth A; Dutilh BE
    Bioinformatics; 2021 May; 37(7):905-912. PubMed ID: 32871010
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps.
    Dilthey AT; Jain C; Koren S; Phillippy AM
    Nat Commun; 2019 Jul; 10(1):3066. PubMed ID: 31296857
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim.
    Yang C; Lo T; Nip KM; Hafezqorani S; Warren RL; Birol I
    Gigascience; 2023 Mar; 12():. PubMed ID: 36939007
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Sketching and sampling approaches for fast and accurate long read classification.
    Das A; Schatz MC
    BMC Bioinformatics; 2022 Oct; 23(1):452. PubMed ID: 36316646
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
    Portik DM; Brown CT; Pierce-Ward NT
    BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MetaCAA: A clustering-aided methodology for efficient assembly of metagenomic datasets.
    Reddy RM; Mohammed MH; Mande SS
    Genomics; 2014; 103(2-3):161-8. PubMed ID: 24607570
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.
    Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D
    Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A comprehensive investigation of metagenome assembly by linked-read sequencing.
    Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
    Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
    [TBL] [Abstract][Full Text] [Related]  

  • 13. HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data.
    Dimopoulos EA; Carmagnini A; Velsko IM; Warinner C; Larson G; Frantz LAF; Irving-Pease EK
    PLoS Comput Biol; 2022 Sep; 18(9):e1010493. PubMed ID: 36178955
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs.
    Cavattoni M; Comin M
    J Comput Biol; 2023 Jun; 30(6):633-647. PubMed ID: 37023405
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MetaBCC-LR: metagenomics binning by coverage and composition for long reads.
    Wickramarachchi A; Mallawaarachchi V; Rajan V; Lin Y
    Bioinformatics; 2020 Jul; 36(Suppl_1):i3-i11. PubMed ID: 32657364
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A de novo metagenomic assembly program for shotgun DNA reads.
    Lai B; Ding R; Li Y; Duan L; Zhu H
    Bioinformatics; 2012 Jun; 28(11):1455-62. PubMed ID: 22495746
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes.
    Patin NV; Goodwin KD
    mSystems; 2022 Dec; 7(6):e0059522. PubMed ID: 36448813
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RIEMS: a software pipeline for sensitive and comprehensive taxonomic classification of reads from metagenomics datasets.
    Scheuch M; Höper D; Beer M
    BMC Bioinformatics; 2015 Mar; 16(1):69. PubMed ID: 25886935
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Accurate genome relative abundance estimation based on shotgun metagenomic reads.
    Xia LC; Cram JA; Chen T; Fuhrman JA; Sun F
    PLoS One; 2011; 6(12):e27992. PubMed ID: 22162995
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Benchmarking genome assembly methods on metagenomic sequencing data.
    Zhang Z; Yang C; Veldsman WP; Fang X; Zhang L
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36917471
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.