These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

201 related articles for article (PubMed ID: 36973656)

  • 1. Benchmarking datasets for assembly-based variant calling using high-fidelity long reads.
    Lee H; Kim J; Lee J
    BMC Genomics; 2023 Mar; 24(1):148. PubMed ID: 36973656
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data.
    Hall MB; Wick RR; Judd LM; Nguyen AN; Steinig EJ; Xie O; Davies M; Seemann T; Stinear TP; Coin L
    Elife; 2024 Oct; 13():. PubMed ID: 39388235
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
    Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
    Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Benchmarking multi-platform sequencing technologies for human genome assembly.
    Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
    Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
    Hotaling S; Wilcox ER; Heckenhauer J; Stewart RJ; Frandsen PB
    BMC Genomics; 2023 Mar; 24(1):117. PubMed ID: 36927511
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A Comparison of Structural Variant Calling from Short-Read and Nanopore-Based Whole-Genome Sequencing Using Optical Genome Mapping as a Benchmark.
    Pei Y; Tanguy M; Giess A; Dixit A; Wilson LC; Gibbons RJ; Twigg SRF; Elgar G; Wilkie AOM
    Genes (Basel); 2024 Jul; 15(7):. PubMed ID: 39062704
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Benchmarking of long-read sequencing, assemblers and polishers for yeast genome.
    Zhang X; Liu CG; Yang SH; Wang X; Bai FW; Wang Z
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35511110
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell.
    Leung AW; Leung HC; Wong CL; Zheng ZX; Lui WW; Luk HM; Lo IF; Luo R; Lam TW
    BMC Med Genomics; 2022 Mar; 15(1):43. PubMed ID: 35246132
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Integrated approach to generate artificial samples with low tumor fraction for somatic variant calling benchmarking.
    Sergi A; Beltrame L; Marchini S; Masseroli M
    BMC Bioinformatics; 2024 May; 25(1):180. PubMed ID: 38720249
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.
    Wenger AM; Peluso P; Rowell WJ; Chang PC; Hall RJ; Concepcion GT; Ebler J; Fungtammasan A; Kolesnikov A; Olson ND; Töpfer A; Alonge M; Mahmoud M; Qian Y; Chin CS; Phillippy AM; Schatz MC; Myers G; DePristo MA; Ruan J; Marschall T; Sedlazeck FJ; Zook JM; Li H; Koren S; Carroll A; Rank DR; Hunkapiller MW
    Nat Biotechnol; 2019 Oct; 37(10):1155-1162. PubMed ID: 31406327
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comparison and benchmark of structural variants detected from long read and long-read assembly.
    Lin J; Jia P; Wang S; Kosters W; Ye K
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200087
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
    Portik DM; Brown CT; Pierce-Ward NT
    BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome.
    Marin M; Vargas R; Harris M; Jeffrey B; Epperson LE; Durbin D; Strong M; Salfinger M; Iqbal Z; Akhundova I; Vashakidze S; Crudu V; Rosenthal A; Farhat MR
    Bioinformatics; 2022 Mar; 38(7):1781-1787. PubMed ID: 35020793
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Local read haplotagging enables accurate long-read small variant calling.
    Kolesnikov A; Cook D; Nattestad M; Brambrink L; McNulty B; Gorzynski J; Goenka S; Ashley EA; Jain M; Miga KH; Paten B; Chang PC; Carroll A; Shafin K
    Nat Commun; 2024 Jul; 15(1):5907. PubMed ID: 39003259
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The impact of FASTQ and alignment read order on structural variant calling from long-read sequencing data.
    Lesack KJ; Wasmuth JD
    PeerJ; 2024; 12():e17101. PubMed ID: 38500526
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SpLitteR: diploid genome assembly using TELL-Seq linked-reads and assembly graphs.
    Tolstoganov I; Chen Z; Pevzner P; Korobeynikov A
    PeerJ; 2024; 12():e18050. PubMed ID: 39351368
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads.
    Vollger MR; Logsdon GA; Audano PA; Sulovari A; Porubsky D; Peluso P; Wenger AM; Concepcion GT; Kronenberg ZN; Munson KM; Baker C; Sanders AD; Spierings DCJ; Lansdorp PM; Surti U; Hunkapiller MW; Eichler EE
    Ann Hum Genet; 2020 Mar; 84(2):125-140. PubMed ID: 31711268
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
    Shafin K; Pesout T; Chang PC; Nattestad M; Kolesnikov A; Goel S; Baid G; Kolmogorov M; Eizenga JM; Miga KH; Carnevali P; Jain M; Carroll A; Paten B
    Nat Methods; 2021 Nov; 18(11):1322-1332. PubMed ID: 34725481
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comprehensive de novo mutation discovery with HiFi long-read sequencing.
    Kucuk E; van der Sanden BPGH; O'Gorman L; Kwint M; Derks R; Wenger AM; Lambert C; Chakraborty S; Baybayan P; Rowell WJ; Brunner HG; Vissers LELM; Hoischen A; Gilissen C
    Genome Med; 2023 May; 15(1):34. PubMed ID: 37158973
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparison of Long-Read Methods for Sequencing and Assembly of Lepidopteran Pest Genomes.
    Zhang T; Xing W; Wang A; Zhang N; Jia L; Ma S; Xia Q
    Int J Mol Sci; 2022 Dec; 24(1):. PubMed ID: 36614092
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.