308 related articles for article (PubMed ID: 36973656)
1. Benchmarking datasets for assembly-based variant calling using high-fidelity long reads.
Lee H; Kim J; Lee J
BMC Genomics; 2023 Mar; 24(1):148. PubMed ID: 36973656
[TBL] [Abstract][Full Text] [Related]
2. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
[TBL] [Abstract][Full Text] [Related]
3. Benchmarking multi-platform sequencing technologies for human genome assembly.
Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
[TBL] [Abstract][Full Text] [Related]
4. Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
Hotaling S; Wilcox ER; Heckenhauer J; Stewart RJ; Frandsen PB
BMC Genomics; 2023 Mar; 24(1):117. PubMed ID: 36927511
[TBL] [Abstract][Full Text] [Related]
5. Benchmarking of long-read sequencing, assemblers and polishers for yeast genome.
Zhang X; Liu CG; Yang SH; Wang X; Bai FW; Wang Z
Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35511110
[TBL] [Abstract][Full Text] [Related]
6. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
Portik DM; Brown CT; Pierce-Ward NT
BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
[TBL] [Abstract][Full Text] [Related]
7. ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell.
Leung AW; Leung HC; Wong CL; Zheng ZX; Lui WW; Luk HM; Lo IF; Luo R; Lam TW
BMC Med Genomics; 2022 Mar; 15(1):43. PubMed ID: 35246132
[TBL] [Abstract][Full Text] [Related]
8. Comparison and benchmark of structural variants detected from long read and long-read assembly.
Lin J; Jia P; Wang S; Kosters W; Ye K
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200087
[TBL] [Abstract][Full Text] [Related]
9. Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.
Wenger AM; Peluso P; Rowell WJ; Chang PC; Hall RJ; Concepcion GT; Ebler J; Fungtammasan A; Kolesnikov A; Olson ND; Töpfer A; Alonge M; Mahmoud M; Qian Y; Chin CS; Phillippy AM; Schatz MC; Myers G; DePristo MA; Ruan J; Marschall T; Sedlazeck FJ; Zook JM; Li H; Koren S; Carroll A; Rank DR; Hunkapiller MW
Nat Biotechnol; 2019 Oct; 37(10):1155-1162. PubMed ID: 31406327
[TBL] [Abstract][Full Text] [Related]
10. Integrated approach to generate artificial samples with low tumor fraction for somatic variant calling benchmarking.
Sergi A; Beltrame L; Marchini S; Masseroli M
BMC Bioinformatics; 2024 May; 25(1):180. PubMed ID: 38720249
[TBL] [Abstract][Full Text] [Related]
11. Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads.
Vollger MR; Logsdon GA; Audano PA; Sulovari A; Porubsky D; Peluso P; Wenger AM; Concepcion GT; Kronenberg ZN; Munson KM; Baker C; Sanders AD; Spierings DCJ; Lansdorp PM; Surti U; Hunkapiller MW; Eichler EE
Ann Hum Genet; 2020 Mar; 84(2):125-140. PubMed ID: 31711268
[TBL] [Abstract][Full Text] [Related]
12. Comprehensive de novo mutation discovery with HiFi long-read sequencing.
Kucuk E; van der Sanden BPGH; O'Gorman L; Kwint M; Derks R; Wenger AM; Lambert C; Chakraborty S; Baybayan P; Rowell WJ; Brunner HG; Vissers LELM; Hoischen A; Gilissen C
Genome Med; 2023 May; 15(1):34. PubMed ID: 37158973
[TBL] [Abstract][Full Text] [Related]
13. Comparison of Long-Read Methods for Sequencing and Assembly of Lepidopteran Pest Genomes.
Zhang T; Xing W; Wang A; Zhang N; Jia L; Ma S; Xia Q
Int J Mol Sci; 2022 Dec; 24(1):. PubMed ID: 36614092
[TBL] [Abstract][Full Text] [Related]
14. Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome.
Marin M; Vargas R; Harris M; Jeffrey B; Epperson LE; Durbin D; Strong M; Salfinger M; Iqbal Z; Akhundova I; Vashakidze S; Crudu V; Rosenthal A; Farhat MR
Bioinformatics; 2022 Mar; 38(7):1781-1787. PubMed ID: 35020793
[TBL] [Abstract][Full Text] [Related]
15. Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
Shafin K; Pesout T; Chang PC; Nattestad M; Kolesnikov A; Goel S; Baid G; Kolmogorov M; Eizenga JM; Miga KH; Carnevali P; Jain M; Carroll A; Paten B
Nat Methods; 2021 Nov; 18(11):1322-1332. PubMed ID: 34725481
[TBL] [Abstract][Full Text] [Related]
16. The impact of FASTQ and alignment read order on structural variant calling from long-read sequencing data.
Lesack KJ; Wasmuth JD
PeerJ; 2024; 12():e17101. PubMed ID: 38500526
[TBL] [Abstract][Full Text] [Related]
17. Performance analysis of conventional and AI-based variant callers using short and long reads.
Abdelwahab O; Belzile F; Torkamaneh D
BMC Bioinformatics; 2023 Dec; 24(1):472. PubMed ID: 38097928
[TBL] [Abstract][Full Text] [Related]
18. RDscan: A New Method for Improving Germline and Somatic Variant Calling Based on Read Depth Distribution.
Lee S; Hong S; Woo J; Lee JH; Kim K; Kim L; Park K; Jung J
J Comput Biol; 2022 Sep; 29(9):987-1000. PubMed ID: 35749140
[TBL] [Abstract][Full Text] [Related]
19. Variant calling and benchmarking in an era of complete human genome sequences.
Olson ND; Wagner J; Dwarshuis N; Miga KH; Sedlazeck FJ; Salit M; Zook JM
Nat Rev Genet; 2023 Jul; 24(7):464-483. PubMed ID: 37059810
[TBL] [Abstract][Full Text] [Related]
20. Benchmarking Low-Frequency Variant Calling With Long-Read Data on Mitochondrial DNA.
Lüth T; Schaake S; Grünewald A; May P; Trinh J; Weissensteiner H
Front Genet; 2022; 13():887644. PubMed ID: 35664331
[No Abstract] [Full Text] [Related]
[Next] [New Search]
