182 related articles for article (PubMed ID: 36976762)
1. Disruption of energetic and dynamic base pairing cooperativity in DNA duplexes by an abasic site.
Ashwood B; Jones MS; Ferguson AL; Tokmakoff A
Proc Natl Acad Sci U S A; 2023 Apr; 120(14):e2219124120. PubMed ID: 36976762
[TBL] [Abstract][Full Text] [Related]
2. Molecular insight into how the position of an abasic site modifies DNA duplex stability and dynamics.
Ashwood B; Jones MS; Lee Y; Sachleben JR; Ferguson AL; Tokmakoff A
Biophys J; 2024 Jan; 123(2):118-133. PubMed ID: 38006207
[TBL] [Abstract][Full Text] [Related]
3. Molecular insight into how the position of an abasic site and its sequence environment influence DNA duplex stability and dynamics.
Ashwood B; Jones MS; Lee Y; Sachleben JR; Ferguson AL; Tokmakoff A
bioRxiv; 2023 Jul; ():. PubMed ID: 37546925
[TBL] [Abstract][Full Text] [Related]
4. Resistance to Nucleotide Excision Repair of Bulky Guanine Adducts Opposite Abasic Sites in DNA Duplexes and Relationships between Structure and Function.
Liu Z; Ding S; Kropachev K; Jia L; Amin S; Broyde S; Geacintov NE
PLoS One; 2015; 10(9):e0137124. PubMed ID: 26340000
[TBL] [Abstract][Full Text] [Related]
5. Oligodeoxynucleotides containing conformationally constrained abasic sites: a UV and fluorescence spectroscopic investigation on duplex stability and structure.
Pompizi I; Häberli A; Leumann CJ
Nucleic Acids Res; 2000 Jul; 28(14):2702-8. PubMed ID: 10908326
[TBL] [Abstract][Full Text] [Related]
6. 15-mer DNA duplexes containing an abasic site are thermodynamically more stable with adjacent purines than with pyrimidines.
Sági J; Guliaev AB; Singer B
Biochemistry; 2001 Apr; 40(13):3859-68. PubMed ID: 11300765
[TBL] [Abstract][Full Text] [Related]
7. Hybridization accompanying FRET event in labeled natural nucleoside-unnatural nucleoside containing chimeric DNA duplexes.
Bag SS; Das SK; Pradhan MK; Jana S
J Photochem Photobiol B; 2016 Sep; 162():669-673. PubMed ID: 27498231
[TBL] [Abstract][Full Text] [Related]
8. NMR solution structures of bistranded abasic site lesions in DNA.
Hazel RD; Tian K; de Los Santos C
Biochemistry; 2008 Nov; 47(46):11909-19. PubMed ID: 18950195
[TBL] [Abstract][Full Text] [Related]
9. DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics.
Chen J; Dupradeau FY; Case DA; Turner CJ; Stubbe J
Nucleic Acids Res; 2008 Jan; 36(1):253-62. PubMed ID: 18025040
[TBL] [Abstract][Full Text] [Related]
10. 5-Carboxylcytosine and Cytosine Protonation Distinctly Alter the Stability and Dehybridization Dynamics of the DNA Duplex.
Ashwood B; Sanstead PJ; Dai Q; He C; Tokmakoff A
J Phys Chem B; 2020 Jan; 124(4):627-640. PubMed ID: 31873021
[TBL] [Abstract][Full Text] [Related]
11. The 5-Me of thyminyl (T) interaction with the neighboring nucleobases dictate the relative stability of isosequential DNA-RNA hybrid duplexes.
Chatterjee S; Pathmasiri W; Chattopadhyaya J
Org Biomol Chem; 2005 Nov; 3(21):3911-5. PubMed ID: 16240008
[TBL] [Abstract][Full Text] [Related]
12. Double-coding nucleic acids: introduction of a nucleobase sequence in the major groove of the DNA duplex using double-headed nucleotides.
Kumar P; Sorinas AF; Nielsen LJ; Slot M; Skytte K; Nielsen AS; Jensen MD; Sharma PK; Vester B; Petersen M; Nielsen P
J Org Chem; 2014 Sep; 79(17):8020-30. PubMed ID: 25089572
[TBL] [Abstract][Full Text] [Related]
13. Thermodynamics and kinetics of DNA and RNA dinucleotide hybridization to gaps and overhangs.
Ashwood B; Jones MS; Radakovic A; Khanna S; Lee Y; Sachleben JR; Szostak JW; Ferguson AL; Tokmakoff A
Biophys J; 2023 Aug; 122(16):3323-3339. PubMed ID: 37469144
[TBL] [Abstract][Full Text] [Related]
14. NMR studies of abasic sites in DNA duplexes: deoxyadenosine stacks into the helix opposite acyclic lesions.
Kalnik MW; Chang CN; Johnson F; Grollman AP; Patel DJ
Biochemistry; 1989 Apr; 28(8):3373-83. PubMed ID: 2545258
[TBL] [Abstract][Full Text] [Related]
15. Coarse-grained simulations of RNA and DNA duplexes.
Cragnolini T; Derreumaux P; Pasquali S
J Phys Chem B; 2013 Jul; 117(27):8047-60. PubMed ID: 23730911
[TBL] [Abstract][Full Text] [Related]
16. A simple, non-nucleosidic base surrogate increases the duplex stability of DNA containing an abasic site.
Langenegger SM; Häner R
Chem Biodivers; 2004 Feb; 1(2):259-64. PubMed ID: 17191844
[TBL] [Abstract][Full Text] [Related]
17. Impact of the C1' configuration of abasic sites on DNA duplex structure.
de Los Santos C; El-Khateeb M; Rege P; Tian K; Johnson F
Biochemistry; 2004 Dec; 43(49):15349-57. PubMed ID: 15581347
[TBL] [Abstract][Full Text] [Related]
18. Direct monitoring of the thermodynamics and kinetics of DNA and RNA dinucleotide dehybridization from gaps and overhangs.
Ashwood B; Jones MS; Radakovic A; Khanna S; Lee Y; Sachleben JR; Szostak JW; Ferguson AL; Tokmakoff A
bioRxiv; 2023 Apr; ():. PubMed ID: 37090657
[TBL] [Abstract][Full Text] [Related]
19. Solution structure of an LNA hybridized to DNA: NMR study of the d(CT(L)GCT(L)T(L)CT(L)GC):d(GCAGAAGCAG) duplex containing four locked nucleotides.
Nielsen KE; Singh SK; Wengel J; Jacobsen JP
Bioconjug Chem; 2000; 11(2):228-38. PubMed ID: 10725100
[TBL] [Abstract][Full Text] [Related]
20. Influence of abasic and anucleosidic sites on the stability, conformation, and melting behavior of a DNA duplex: correlations of thermodynamic and structural data.
Vesnaver G; Chang CN; Eisenberg M; Grollman AP; Breslauer KJ
Proc Natl Acad Sci U S A; 1989 May; 86(10):3614-8. PubMed ID: 2726738
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]