These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

120 related articles for article (PubMed ID: 36993557)

  • 1. Neurodesk: An accessible, flexible, and portable data analysis environment for reproducible neuroimaging.
    Renton AI; Dao TT; Johnstone T; Civier O; Sullivan RP; White DJ; Lyons P; Slade BM; Abbott DF; Amos TJ; Bollmann S; Botting A; Campbell MEJ; Chang J; Close TG; Eckstein K; Egan GF; Evas S; Flandin G; Garner KG; Garrido MI; Ghosh SS; Grignard M; Hannan AJ; Huber R; Kaczmarzyk JR; Kasper L; Kuhlmann L; Lou K; Mantilla-Ramos YJ; Mattingley JB; Morris J; Narayanan A; Pestilli F; Puce A; Ribeiro FL; Rogasch NC; Rorden C; Schira M; Shaw TB; Sowman PF; Spitz G; Stewart A; Ye X; Zhu JD; Hughes ME; Narayanan A; Bollmann S
    Res Sq; 2023 Mar; ():. PubMed ID: 36993557
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.
    Renton AI; Dao TT; Johnstone T; Civier O; Sullivan RP; White DJ; Lyons P; Slade BM; Abbott DF; Amos TJ; Bollmann S; Botting A; Campbell MEJ; Chang J; Close TG; Dörig M; Eckstein K; Egan GF; Evas S; Flandin G; Garner KG; Garrido MI; Ghosh SS; Grignard M; Halchenko YO; Hannan AJ; Heinsfeld AS; Huber L; Hughes ME; Kaczmarzyk JR; Kasper L; Kuhlmann L; Lou K; Mantilla-Ramos YJ; Mattingley JB; Meier ML; Morris J; Narayanan A; Pestilli F; Puce A; Ribeiro FL; Rogasch NC; Rorden C; Schira MM; Shaw TB; Sowman PF; Spitz G; Stewart AW; Ye X; Zhu JD; Narayanan A; Bollmann S
    Nat Methods; 2024 May; 21(5):804-808. PubMed ID: 38191935
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Cloud-enabled Biodepot workflow builder integrates image processing using Fiji with reproducible data analysis using Jupyter notebooks.
    Hung LH; Straw E; Reddy S; Schmitz R; Colburn Z; Yeung KY
    Sci Rep; 2022 Sep; 12(1):14920. PubMed ID: 36056115
    [TBL] [Abstract][Full Text] [Related]  

  • 4. CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing.
    Angiuoli SV; Matalka M; Gussman A; Galens K; Vangala M; Riley DR; Arze C; White JR; White O; Fricke WF
    BMC Bioinformatics; 2011 Aug; 12():356. PubMed ID: 21878105
    [TBL] [Abstract][Full Text] [Related]  

  • 5. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
    Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
    Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GUIdock-VNC: using a graphical desktop sharing system to provide a browser-based interface for containerized software.
    Mittal V; Hung LH; Keswani J; Kristiyanto D; Lee SB; Yeung KY
    Gigascience; 2017 Apr; 6(4):1-6. PubMed ID: 28327936
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community.
    Krampis K; Booth T; Chapman B; Tiwari B; Bicak M; Field D; Nelson KE
    BMC Bioinformatics; 2012 Mar; 13():42. PubMed ID: 22429538
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Reproducible Bioconductor workflows using browser-based interactive notebooks and containers.
    Almugbel R; Hung LH; Hu J; Almutairy A; Ortogero N; Tamta Y; Yeung KY
    J Am Med Inform Assoc; 2018 Jan; 25(1):4-12. PubMed ID: 29092073
    [TBL] [Abstract][Full Text] [Related]  

  • 9. QuNex-An integrative platform for reproducible neuroimaging analytics.
    Ji JL; Demšar J; Fonteneau C; Tamayo Z; Pan L; Kraljič A; Matkovič A; Purg N; Helmer M; Warrington S; Winkler A; Zerbi V; Coalson TS; Glasser MF; Harms MP; Sotiropoulos SN; Murray JD; Anticevic A; Repovš G
    Front Neuroinform; 2023; 17():1104508. PubMed ID: 37090033
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud.
    Afgan E; Sloggett C; Goonasekera N; Makunin I; Benson D; Crowe M; Gladman S; Kowsar Y; Pheasant M; Horst R; Lonie A
    PLoS One; 2015; 10(10):e0140829. PubMed ID: 26501966
    [TBL] [Abstract][Full Text] [Related]  

  • 11. NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline.
    Xu Y; Yang-Turner F; Volk D; Crook D
    Nucleic Acids Res; 2020 Jul; 48(W1):W366-W371. PubMed ID: 32442274
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Toward collaborative open data science in metabolomics using Jupyter Notebooks and cloud computing.
    Mendez KM; Pritchard L; Reinke SN; Broadhurst DI
    Metabolomics; 2019 Sep; 15(10):125. PubMed ID: 31522294
    [TBL] [Abstract][Full Text] [Related]  

  • 13. JBrowse Jupyter: a Python interface to JBrowse 2.
    De Jesus Martinez T; Hershberg EA; Guo E; Stevens GJ; Diesh C; Xie P; Bridge C; Cain S; Haw R; Buels RM; Stein LD; Holmes IH
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36648320
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Cloud Computing for Metagenomics: Building a Personalized Computational Platform for Pipeline Analyses.
    Callaghan M
    Methods Mol Biol; 2023; 2649():261-279. PubMed ID: 37258867
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MCX Cloud-a modern, scalable, high-performance and in-browser Monte Carlo simulation platform with cloud computing.
    Fang Q; Yan S
    J Biomed Opt; 2022 Jan; 27(8):. PubMed ID: 34989198
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FlywheelTools: Data Curation and Manipulation on the Flywheel Platform.
    Tapera TM; Cieslak M; Bertolero M; Adebimpe A; Aguirre GK; Butler ER; Cook PA; Davila D; Elliott MA; Linguiti S; Murtha K; Tackett W; Detre JA; Satterthwaite TD
    Front Neuroinform; 2021; 15():678403. PubMed ID: 34239433
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite.
    Hafez AI; Soriano B; Elsayed AA; Futami R; Ceprian R; Ramos-Ruiz R; Martinez G; Roig FJ; Torres-Font MA; Naya-Catala F; Calduch-Giner JA; Trilla-Fuertes L; Gamez-Pozo A; Arnau V; Sempere-Luna JM; Perez-Sanchez J; Gabaldon T; Llorens C
    Genes (Basel); 2023 Jan; 14(2):. PubMed ID: 36833195
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Bio-Docklets: virtualization containers for single-step execution of NGS pipelines.
    Kim B; Ali T; Lijeron C; Afgan E; Krampis K
    Gigascience; 2017 Aug; 6(8):1-7. PubMed ID: 28854616
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Boutiques: a flexible framework to integrate command-line applications in computing platforms.
    Glatard T; Kiar G; Aumentado-Armstrong T; Beck N; Bellec P; Bernard R; Bonnet A; Brown ST; Camarasu-Pop S; Cervenansky F; Das S; Ferreira da Silva R; Flandin G; Girard P; Gorgolewski KJ; Guttmann CRG; Hayot-Sasson V; Quirion PO; Rioux P; Rousseau MÉ; Evans AC
    Gigascience; 2018 May; 7(5):. PubMed ID: 29718199
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PM4NGS, a project management framework for next-generation sequencing data analysis.
    Vera Alvarez R; Pongor L; Mariño-Ramírez L; Landsman D
    Gigascience; 2021 Jan; 10(1):. PubMed ID: 33410471
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.