These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
165 related articles for article (PubMed ID: 36998720)
21. DIMM-SC: a Dirichlet mixture model for clustering droplet-based single cell transcriptomic data. Sun Z; Wang T; Deng K; Wang XF; Lafyatis R; Ding Y; Hu M; Chen W Bioinformatics; 2018 Jan; 34(1):139-146. PubMed ID: 29036318 [TBL] [Abstract][Full Text] [Related]
22. scanMiR: a biochemically based toolkit for versatile and efficient microRNA target prediction. Soutschek M; Gross F; Schratt G; Germain PL Bioinformatics; 2022 Apr; 38(9):2466-2473. PubMed ID: 35188178 [TBL] [Abstract][Full Text] [Related]
23. MACA: marker-based automatic cell-type annotation for single-cell expression data. Xu Y; Baumgart SJ; Stegmann CM; Hayat S Bioinformatics; 2022 Mar; 38(6):1756-1760. PubMed ID: 34935911 [TBL] [Abstract][Full Text] [Related]
24. scMRA: a robust deep learning method to annotate scRNA-seq data with multiple reference datasets. Yuan M; Chen L; Deng M Bioinformatics; 2022 Jan; 38(3):738-745. PubMed ID: 34623390 [TBL] [Abstract][Full Text] [Related]
25. HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data. Gu Z; Eils R; Schlesner M Bioinformatics; 2016 Aug; 32(15):2372-4. PubMed ID: 27153599 [TBL] [Abstract][Full Text] [Related]
26. primirTSS: an R package for identifying cell-specific microRNA transcription start sites. Li P; Xu Q; Hua X; Xie Z; Li J; Wang J Bioinformatics; 2020 Jun; 36(11):3605-3606. PubMed ID: 32170928 [TBL] [Abstract][Full Text] [Related]
28. OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data. Leng N; Choi J; Chu LF; Thomson JA; Kendziorski C; Stewart R Bioinformatics; 2016 May; 32(9):1408-10. PubMed ID: 26743507 [TBL] [Abstract][Full Text] [Related]
29. scPNMF: sparse gene encoding of single cells to facilitate gene selection for targeted gene profiling. Song D; Li K; Hemminger Z; Wollman R; Li JJ Bioinformatics; 2021 Jul; 37(Suppl_1):i358-i366. PubMed ID: 34252925 [TBL] [Abstract][Full Text] [Related]
30. Make Interactive Complex Heatmaps in R. Gu Z; Hübschmann D Bioinformatics; 2022 Feb; 38(5):1460-1462. PubMed ID: 34864868 [TBL] [Abstract][Full Text] [Related]
31. The optimal discovery procedure for significance analysis of general gene expression studies. Bass AJ; Storey JD Bioinformatics; 2021 Apr; 37(3):367-374. PubMed ID: 32818252 [TBL] [Abstract][Full Text] [Related]
32. Single-cell Mayo Map ( Yang L; Ng YE; Sun H; Li Y; Chini LCS; LeBrasseur NK; Chen J; Zhang X bioRxiv; 2023 May; ():. PubMed ID: 37205463 [TBL] [Abstract][Full Text] [Related]
33. scSemiGAN: a single-cell semi-supervised annotation and dimensionality reduction framework based on generative adversarial network. Xu Z; Luo J; Xiong Z Bioinformatics; 2022 Nov; 38(22):5042-5048. PubMed ID: 36193998 [TBL] [Abstract][Full Text] [Related]
35. APAlyzer: a bioinformatics package for analysis of alternative polyadenylation isoforms. Wang R; Tian B Bioinformatics; 2020 Jun; 36(12):3907-3909. PubMed ID: 32321166 [TBL] [Abstract][Full Text] [Related]
36. scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data. Choi JH; In Kim H; Woo HG BMC Bioinformatics; 2020 Aug; 21(1):342. PubMed ID: 32753029 [TBL] [Abstract][Full Text] [Related]
37. ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses. Huntley MA; Larson JL; Chaivorapol C; Becker G; Lawrence M; Hackney JA; Kaminker JS Bioinformatics; 2013 Dec; 29(24):3220-1. PubMed ID: 24078713 [TBL] [Abstract][Full Text] [Related]
38. DEsingle for detecting three types of differential expression in single-cell RNA-seq data. Miao Z; Deng K; Wang X; Zhang X Bioinformatics; 2018 Sep; 34(18):3223-3224. PubMed ID: 29688277 [TBL] [Abstract][Full Text] [Related]
39. ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data. Gardeux V; David FPA; Shajkofci A; Schwalie PC; Deplancke B Bioinformatics; 2017 Oct; 33(19):3123-3125. PubMed ID: 28541377 [TBL] [Abstract][Full Text] [Related]