138 related articles for article (PubMed ID: 37020976)
21. AMICI: high-performance sensitivity analysis for large ordinary differential equation models.
Fröhlich F; Weindl D; Schälte Y; Pathirana D; Paszkowski Ł; Lines GT; Stapor P; Hasenauer J
Bioinformatics; 2021 Oct; 37(20):3676-3677. PubMed ID: 33821950
[TBL] [Abstract][Full Text] [Related]
22. The systems biology simulation core library.
Panchiwala H; Shah S; Planatscher H; Zakharchuk M; König M; Dräger A
Bioinformatics; 2022 Jan; 38(3):864-865. PubMed ID: 34554191
[TBL] [Abstract][Full Text] [Related]
23. SimPlot++: a Python application for representing sequence similarity and detecting recombination.
Samson S; Lord É; Makarenkov V
Bioinformatics; 2022 May; 38(11):3118-3120. PubMed ID: 35451456
[TBL] [Abstract][Full Text] [Related]
24. SCell: integrated analysis of single-cell RNA-seq data.
Diaz A; Liu SJ; Sandoval C; Pollen A; Nowakowski TJ; Lim DA; Kriegstein A
Bioinformatics; 2016 Jul; 32(14):2219-20. PubMed ID: 27153637
[TBL] [Abstract][Full Text] [Related]
25. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
[TBL] [Abstract][Full Text] [Related]
26. LibSBMLSim: a reference implementation of fully functional SBML simulator.
Takizawa H; Nakamura K; Tabira A; Chikahara Y; Matsui T; Hiroi N; Funahashi A
Bioinformatics; 2013 Jun; 29(11):1474-6. PubMed ID: 23564843
[TBL] [Abstract][Full Text] [Related]
27. A scalable moment-closure approximation for large-scale biochemical reaction networks.
Kazeroonian A; Theis FJ; Hasenauer J
Bioinformatics; 2017 Jul; 33(14):i293-i300. PubMed ID: 28881983
[TBL] [Abstract][Full Text] [Related]
28. SBMLDiagrams: a python package to process and visualize SBML layout and render.
Xu J; Jiang J; Sauro HM
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36370074
[TBL] [Abstract][Full Text] [Related]
29. AdmixPipe v3: facilitating population structure delimitation from SNP data.
Mussmann SM; Douglas MR; Chafin TK; Douglas ME
Bioinform Adv; 2023; 3(1):vbad168. PubMed ID: 38046098
[TBL] [Abstract][Full Text] [Related]
30. ipyrad: Interactive assembly and analysis of RADseq datasets.
Eaton DAR; Overcast I
Bioinformatics; 2020 Apr; 36(8):2592-2594. PubMed ID: 31904816
[TBL] [Abstract][Full Text] [Related]
31. CABS-flex standalone: a simulation environment for fast modeling of protein flexibility.
Kurcinski M; Oleniecki T; Ciemny MP; Kuriata A; Kolinski A; Kmiecik S
Bioinformatics; 2019 Feb; 35(4):694-695. PubMed ID: 30101282
[TBL] [Abstract][Full Text] [Related]
32. PyOIF: Computational tool for modelling of multi-cell flows in complex geometries.
Jančigová I; Kovalčíková K; Weeber R; Cimrák I
PLoS Comput Biol; 2020 Oct; 16(10):e1008249. PubMed ID: 33075044
[TBL] [Abstract][Full Text] [Related]
33. libsbmljs-Enabling web-based SBML tools.
Medley JK; Hellerstein J; Sauro HM
Biosystems; 2020 Jul; 195():104150. PubMed ID: 32339626
[TBL] [Abstract][Full Text] [Related]
34. ImagePy: an open-source, Python-based and platform-independent software package for bioimage analysis.
Wang A; Yan X; Wei Z
Bioinformatics; 2018 Sep; 34(18):3238-3240. PubMed ID: 29718132
[TBL] [Abstract][Full Text] [Related]
35. Implementation of a practical Markov chain Monte Carlo sampling algorithm in PyBioNetFit.
Neumann J; Lin YT; Mallela A; Miller EF; Colvin J; Duprat AT; Chen Y; Hlavacek WS; Posner RG
Bioinformatics; 2022 Mar; 38(6):1770-1772. PubMed ID: 34986226
[TBL] [Abstract][Full Text] [Related]
36. Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs.
Formenti G; Abueg L; Brajuka A; Brajuka N; Gallardo-Alba C; Giani A; Fedrigo O; Jarvis ED
Bioinformatics; 2022 Sep; 38(17):4214-4216. PubMed ID: 35799367
[TBL] [Abstract][Full Text] [Related]
37. ICBdocker: a Docker image for proteome annotation and visualization.
Bordin N; Devos DP
Bioinformatics; 2018 Nov; 34(22):3937-3938. PubMed ID: 29931249
[TBL] [Abstract][Full Text] [Related]
38. PESTO: Parameter EStimation TOolbox.
Stapor P; Weindl D; Ballnus B; Hug S; Loos C; Fiedler A; Krause S; Hroß S; Fröhlich F; Hasenauer J
Bioinformatics; 2018 Feb; 34(4):705-707. PubMed ID: 29069312
[TBL] [Abstract][Full Text] [Related]
39. Cellenium-a scalable and interactive visual analytics app for exploring multimodal single-cell data.
Jahn C; Ibrahim M; Busch J; Lin Q; Manchanda H; Mohr H; Plischke D; Roider HG; Steffen A
Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37261846
[TBL] [Abstract][Full Text] [Related]
40. SnapperDB: a database solution for routine sequencing analysis of bacterial isolates.
Dallman T; Ashton P; Schafer U; Jironkin A; Painset A; Shaaban S; Hartman H; Myers R; Underwood A; Jenkins C; Grant K
Bioinformatics; 2018 Sep; 34(17):3028-3029. PubMed ID: 29659710
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]