These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

248 related articles for article (PubMed ID: 37021559)

  • 1. Esearch3D: propagating gene expression in chromatin networks to illuminate active enhancers.
    Heer M; Giudice L; Mengoni C; Giugno R; Rico D
    Nucleic Acids Res; 2023 Jun; 51(10):e55. PubMed ID: 37021559
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Evaluating Enhancer Function and Transcription.
    Field A; Adelman K
    Annu Rev Biochem; 2020 Jun; 89():213-234. PubMed ID: 32197056
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.
    Zhang Y; Wong CH; Birnbaum RY; Li G; Favaro R; Ngan CY; Lim J; Tai E; Poh HM; Wong E; Mulawadi FH; Sung WK; Nicolis S; Ahituv N; Ruan Y; Wei CL
    Nature; 2013 Dec; 504(7479):306-310. PubMed ID: 24213634
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features.
    Chen CY; Morris Q; Mitchell JA
    BMC Genomics; 2012 Apr; 13():152. PubMed ID: 22537144
    [TBL] [Abstract][Full Text] [Related]  

  • 5. High resolution mapping of enhancer-promoter interactions.
    Reeder C; Closser M; Poh HM; Sandhu K; Wichterle H; Gifford D
    PLoS One; 2015; 10(5):e0122420. PubMed ID: 25970635
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.
    Cubeñas-Potts C; Rowley MJ; Lyu X; Li G; Lei EP; Corces VG
    Nucleic Acids Res; 2017 Feb; 45(4):1714-1730. PubMed ID: 27899590
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Bidirectional transcription initiation marks accessible chromatin and is not specific to enhancers.
    Young RS; Kumar Y; Bickmore WA; Taylor MS
    Genome Biol; 2017 Dec; 18(1):242. PubMed ID: 29284524
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Computational Approaches for Mining GRO-Seq Data to Identify and Characterize Active Enhancers.
    Nagari A; Murakami S; Malladi VS; Kraus WL
    Methods Mol Biol; 2017; 1468():121-38. PubMed ID: 27662874
    [TBL] [Abstract][Full Text] [Related]  

  • 9. 5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells.
    Poterlowicz K; Yarker JL; Malashchuk I; Lajoie BR; Mardaryev AN; Gdula MR; Sharov AA; Kohwi-Shigematsu T; Botchkarev VA; Fessing MY
    PLoS Genet; 2017 Sep; 13(9):e1006966. PubMed ID: 28863138
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Emerging roles of transcriptional enhancers in chromatin looping and promoter-proximal pausing of RNA polymerase II.
    Meng H; Bartholomew B
    J Biol Chem; 2018 Sep; 293(36):13786-13794. PubMed ID: 29187597
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome-wide analysis of FOXO3 mediated transcription regulation through RNA polymerase II profiling.
    Eijkelenboom A; Mokry M; de Wit E; Smits LM; Polderman PE; van Triest MH; van Boxtel R; Schulze A; de Laat W; Cuppen E; Burgering BM
    Mol Syst Biol; 2013; 9():638. PubMed ID: 23340844
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Long distance relationships: enhancer-promoter communication and dynamic gene transcription.
    Marsman J; Horsfield JA
    Biochim Biophys Acta; 2012; 1819(11-12):1217-27. PubMed ID: 23124110
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C data.
    Miko H; Qiu Y; Gaertner B; Sander M; Ohler U
    BMC Genomics; 2021 Jan; 22(1):84. PubMed ID: 33509077
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Global Quantitative Mapping of Enhancers in Rice by STARR-seq.
    Sun J; He N; Niu L; Huang Y; Shen W; Zhang Y; Li L; Hou C
    Genomics Proteomics Bioinformatics; 2019 Apr; 17(2):140-153. PubMed ID: 31201999
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Chromatin signatures of active enhancers.
    Spicuglia S; Vanhille L
    Nucleus; 2012 Mar; 3(2):126-31. PubMed ID: 22555596
    [TBL] [Abstract][Full Text] [Related]  

  • 16. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells.
    Peng T; Zhai Y; Atlasi Y; Ter Huurne M; Marks H; Stunnenberg HG; Megchelenbrink W
    Genome Biol; 2020 Sep; 21(1):243. PubMed ID: 32912294
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The chromatin Remodeler CHD8 is required for activation of progesterone receptor-dependent enhancers.
    Ceballos-Chávez M; Subtil-Rodríguez A; Giannopoulou EG; Soronellas D; Vázquez-Chávez E; Vicent GP; Elemento O; Beato M; Reyes JC
    PLoS Genet; 2015 Apr; 11(4):e1005174. PubMed ID: 25894978
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression.
    Varshney A; VanRenterghem H; Orchard P; Boyle AP; Stitzel ML; Ucar D; Parker SCJ
    Genetics; 2019 Feb; 211(2):549-562. PubMed ID: 30593493
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Opening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions.
    Kim SG; Theera-Ampornpunt N; Fang CH; Harwani M; Grama A; Chaterji S
    BMC Syst Biol; 2016 Aug; 10 Suppl 2(Suppl 2):54. PubMed ID: 27490187
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization.
    Chepelev I; Wei G; Wangsa D; Tang Q; Zhao K
    Cell Res; 2012 Mar; 22(3):490-503. PubMed ID: 22270183
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.