These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. Quantitative modeling of a gene's expression from its intergenic sequence. Samee MA; Sinha S PLoS Comput Biol; 2014 Mar; 10(3):e1003467. PubMed ID: 24604095 [TBL] [Abstract][Full Text] [Related]
4. Predicting genetic regulatory response using classification. Middendorf M; Kundaje A; Wiggins C; Freund Y; Leslie C Bioinformatics; 2004 Aug; 20 Suppl 1():i232-40. PubMed ID: 15262804 [TBL] [Abstract][Full Text] [Related]
5. The landscape of regulatory genes in brain-wide neuronal phenotypes of a vertebrate brain. Zhang H; Wang H; Shen X; Jia X; Yu S; Qiu X; Wang Y; Du J; Yan J; He J Elife; 2021 Dec; 10():. PubMed ID: 34895465 [TBL] [Abstract][Full Text] [Related]
6. Long-range repression by ecdysone receptor on complex enhancers of the insulin receptor gene. Thompson K; Suber W; Nicholas R; Arnosti DN bioRxiv; 2023 May; ():. PubMed ID: 37293119 [TBL] [Abstract][Full Text] [Related]
7. Widespread Strain-Specific Distinctions in Chromosomal Binding Dynamics of a Highly Conserved Escherichia coli Transcription Factor. Connolly JPR; O'Boyle N; Roe AJ mBio; 2020 Jun; 11(3):. PubMed ID: 32576674 [TBL] [Abstract][Full Text] [Related]
8. Diversity in Phillips KN; Widmann S; Lai HY; Nguyen J; Ray JCJ; Balázsi G; Cooper TF mBio; 2019 Nov; 10(6):. PubMed ID: 31719176 [TBL] [Abstract][Full Text] [Related]
9. Chromatin regulation and gene centrality are essential for controlling fitness pleiotropy in yeast. Zhou L; Ma X; Arbeitman MN; Sun F PLoS One; 2009 Nov; 4(11):e8086. PubMed ID: 19956643 [TBL] [Abstract][Full Text] [Related]
10. A Genome-Wide Search for Ionizing-Radiation-Responsive Elements in Deinococcus radiodurans Reveals a Regulatory Role for the DNA Gyrase Subunit A Gene's 5' Untranslated Region in the Radiation and Desiccation Response. Villa JK; Amador P; Janovsky J; Bhuyan A; Saldanha R; Lamkin TJ; Contreras LM Appl Environ Microbiol; 2017 Jun; 83(12):. PubMed ID: 28411225 [TBL] [Abstract][Full Text] [Related]
11. High-Resolution Mapping of the Escherichia coli Chromosome Reveals Positions of High and Low Transcription. Scholz SA; Diao R; Wolfe MB; Fivenson EM; Lin XN; Freddolino PL Cell Syst; 2019 Mar; 8(3):212-225.e9. PubMed ID: 30904377 [TBL] [Abstract][Full Text] [Related]
12. Transcriptional Regulation Buffers Gene Dosage Effects on a Highly Expressed Operon in Garmendia E; Brandis G; Hughes D mBio; 2018 Sep; 9(5):. PubMed ID: 30206172 [TBL] [Abstract][Full Text] [Related]
13. Genome-wide signatures of transcription factor activity: connecting transcription factors, disease, and small molecules. Chen J; Hu Z; Phatak M; Reichard J; Freudenberg JM; Sivaganesan S; Medvedovic M PLoS Comput Biol; 2013; 9(9):e1003198. PubMed ID: 24039560 [TBL] [Abstract][Full Text] [Related]
14. Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes. Couturier E; Rocha EP Mol Microbiol; 2006 Mar; 59(5):1506-18. PubMed ID: 16468991 [TBL] [Abstract][Full Text] [Related]
15. Erratum: Eyestalk Ablation to Increase Ovarian Maturation in Mud Crabs. J Vis Exp; 2023 May; (195):. PubMed ID: 37235796 [TBL] [Abstract][Full Text] [Related]
16. Replication timing networks reveal a link between transcription regulatory circuits and replication timing control. Rivera-Mulia JC; Kim S; Gabr H; Chakraborty A; Ay F; Kahveci T; Gilbert DM Genome Res; 2019 Sep; 29(9):1415-1428. PubMed ID: 31434679 [TBL] [Abstract][Full Text] [Related]
17. The effects of protein interactions, gene essentiality and regulatory regions on expression variation. Zhou L; Ma X; Sun F BMC Syst Biol; 2008 Jun; 2():54. PubMed ID: 18582382 [TBL] [Abstract][Full Text] [Related]
18. Comparative analysis of the transcription-factor gene regulatory networks of E. coli and S. cerevisiae. Guzmán-Vargas L; Santillán M BMC Syst Biol; 2008 Jan; 2():13. PubMed ID: 18237429 [TBL] [Abstract][Full Text] [Related]
19. The sociobiology of genes: the gene's eye view as a unifying behavioural-ecological framework for biological evolution. De Tiège A; Van de Peer Y; Braeckman J; Tanghe KB Hist Philos Life Sci; 2017 Nov; 40(1):6. PubMed ID: 29168053 [TBL] [Abstract][Full Text] [Related]