These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

186 related articles for article (PubMed ID: 37055660)

  • 1. BUDDY: molecular formula discovery via bottom-up MS/MS interrogation.
    Xing S; Shen S; Xu B; Li X; Huan T
    Nat Methods; 2023 Jun; 20(6):881-890. PubMed ID: 37055660
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MetFID: artificial neural network-based compound fingerprint prediction for metabolite annotation.
    Fan Z; Alley A; Ghaffari K; Ressom HW
    Metabolomics; 2020 Sep; 16(10):104. PubMed ID: 32997169
    [TBL] [Abstract][Full Text] [Related]  

  • 3. [A novel method for efficient screening and annotation of important pathway-associated metabolites based on the modified metabolome and probe molecules].
    Li Z; Zheng F; Xia Y; Zhang X; Wang X; Zhao C; Zhao X; Lu X; Xu G
    Se Pu; 2022 Sep; 40(9):788-796. PubMed ID: 36156625
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Propagating annotations of molecular networks using in silico fragmentation.
    da Silva RR; Wang M; Nothias LF; van der Hooft JJJ; Caraballo-Rodríguez AM; Fox E; Balunas MJ; Klassen JL; Lopes NP; Dorrestein PC
    PLoS Comput Biol; 2018 Apr; 14(4):e1006089. PubMed ID: 29668671
    [TBL] [Abstract][Full Text] [Related]  

  • 5. De Novo Molecular Formula Annotation and Structure Elucidation Using SIRIUS 4.
    Ludwig M; Fleischauer M; Dührkop K; Hoffmann MA; Böcker S
    Methods Mol Biol; 2020; 2104():185-207. PubMed ID: 31953819
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MolFind
    Samaraweera MA; Hill DW; Grant DF
    Methods Mol Biol; 2020; 2084():283-295. PubMed ID: 31729668
    [TBL] [Abstract][Full Text] [Related]  

  • 7. IDSL.CSA: Composite Spectra Analysis for Chemical Annotation of Untargeted Metabolomics Datasets.
    Baygi SF; Kumar Y; Barupal DK
    Anal Chem; 2023 Jun; 95(25):9480-9487. PubMed ID: 37311059
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Computational mass spectrometry for metabolomics: identification of metabolites and small molecules.
    Neumann S; Böcker S
    Anal Bioanal Chem; 2010 Dec; 398(7-8):2779-88. PubMed ID: 20936272
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra.
    Allen F; Pon A; Wilson M; Greiner R; Wishart D
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W94-9. PubMed ID: 24895432
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Addressing big data challenges in mass spectrometry-based metabolomics.
    Guo J; Yu H; Xing S; Huan T
    Chem Commun (Camb); 2022 Sep; 58(72):9979-9990. PubMed ID: 35997016
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MetaboShiny: interactive analysis and metabolite annotation of mass spectrometry-based metabolomics data.
    Wolthuis JC; Magnusdottir S; Pras-Raves M; Moshiri M; Jans JJM; Burgering B; van Mil S; de Ridder J
    Metabolomics; 2020 Sep; 16(9):99. PubMed ID: 32915321
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MAW: the reproducible Metabolome Annotation Workflow for untargeted tandem mass spectrometry.
    Zulfiqar M; Gadelha L; Steinbeck C; Sorokina M; Peters K
    J Cheminform; 2023 Mar; 15(1):32. PubMed ID: 36871033
    [TBL] [Abstract][Full Text] [Related]  

  • 13. IDSL.UFA Assigns High-Confidence Molecular Formula Annotations for Untargeted LC/HRMS Data Sets in Metabolomics and Exposomics.
    Baygi SF; Banerjee SK; Chakraborty P; Kumar Y; Barupal DK
    Anal Chem; 2022 Oct; 94(39):13315-13322. PubMed ID: 36137231
    [TBL] [Abstract][Full Text] [Related]  

  • 14. High-confidence structural annotation of metabolites absent from spectral libraries.
    Hoffmann MA; Nothias LF; Ludwig M; Fleischauer M; Gentry EC; Witting M; Dorrestein PC; Dührkop K; Böcker S
    Nat Biotechnol; 2022 Mar; 40(3):411-421. PubMed ID: 34650271
    [TBL] [Abstract][Full Text] [Related]  

  • 15. peakPantheR, an R package for large-scale targeted extraction and integration of annotated metabolic features in LC-MS profiling datasets.
    Wolfer AM; D S Correia G; Sands CJ; Camuzeaux S; Yuen AHY; Chekmeneva E; Takáts Z; Pearce JTM; Lewis MR
    Bioinformatics; 2021 Dec; 37(24):4886-4888. PubMed ID: 34125879
    [TBL] [Abstract][Full Text] [Related]  

  • 16.
    Zhao T; Xing S; Yu H; Huan T
    Anal Chem; 2023 Sep; 95(35):13018-13028. PubMed ID: 37603462
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Biologically Consistent Annotation of Metabolomics Data.
    Alden N; Krishnan S; Porokhin V; Raju R; McElearney K; Gilbert A; Lee K
    Anal Chem; 2017 Dec; 89(24):13097-13104. PubMed ID: 29156137
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ipaPy2: Integrated Probabilistic Annotation (IPA) 2.0-an improved Bayesian-based method for the annotation of LC-MS/MS untargeted metabolomics data.
    Del Carratore F; Eagles W; Borka J; Breitling R
    Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37490466
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ISFrag: De Novo Recognition of In-Source Fragments for Liquid Chromatography-Mass Spectrometry Data.
    Guo J; Shen S; Xing S; Yu H; Huan T
    Anal Chem; 2021 Jul; 93(29):10243-10250. PubMed ID: 34270210
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation.
    Sakurai T; Yamada Y; Sawada Y; Matsuda F; Akiyama K; Shinozaki K; Hirai MY; Saito K
    Plant Cell Physiol; 2013 Feb; 54(2):e5. PubMed ID: 23292601
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.