These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 37085823)

  • 1. Consequences and opportunities arising due to sparser single-cell RNA-seq datasets.
    Bouland GA; Mahfouz A; Reinders MJT
    Genome Biol; 2023 Apr; 24(1):86. PubMed ID: 37085823
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.
    Slovin S; Carissimo A; Panariello F; Grimaldi A; Bouché V; Gambardella G; Cacchiarelli D
    Methods Mol Biol; 2021; 2284():343-365. PubMed ID: 33835452
    [TBL] [Abstract][Full Text] [Related]  

  • 3. scGCL: an imputation method for scRNA-seq data based on graph contrastive learning.
    Xiong Z; Luo J; Shi W; Liu Y; Xu Z; Wang B
    Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36825817
    [TBL] [Abstract][Full Text] [Related]  

  • 4. scDCCA: deep contrastive clustering for single-cell RNA-seq data based on auto-encoder network.
    Wang J; Xia J; Wang H; Su Y; Zheng CH
    Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36631401
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GE-Impute: graph embedding-based imputation for single-cell RNA-seq data.
    Wu X; Zhou Y
    Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35901457
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Random forest based similarity learning for single cell RNA sequencing data.
    Pouyan MB; Kostka D
    Bioinformatics; 2018 Jul; 34(13):i79-i88. PubMed ID: 29950006
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Data Analysis in Single-Cell Transcriptome Sequencing.
    Gao S
    Methods Mol Biol; 2018; 1754():311-326. PubMed ID: 29536451
    [TBL] [Abstract][Full Text] [Related]  

  • 8. scDSSC: Deep Sparse Subspace Clustering for scRNA-seq Data.
    Wang H; Zhao J; Zheng C; Su Y
    PLoS Comput Biol; 2022 Dec; 18(12):e1010772. PubMed ID: 36534702
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data.
    Chen S; Yan X; Zheng R; Li M
    Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36567258
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database.
    Zappia L; Phipson B; Oshlack A
    PLoS Comput Biol; 2018 Jun; 14(6):e1006245. PubMed ID: 29939984
    [TBL] [Abstract][Full Text] [Related]  

  • 11. GNN-based embedding for clustering scRNA-seq data.
    Ciortan M; Defrance M
    Bioinformatics; 2022 Jan; 38(4):1037-1044. PubMed ID: 34850828
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE.
    You Y; Prawer YDJ; De Paoli-Iseppi R; Hunt CPJ; Parish CL; Shim H; Clark MB
    Genome Biol; 2023 Apr; 24(1):66. PubMed ID: 37024980
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CBLRR: a cauchy-based bounded constraint low-rank representation method to cluster single-cell RNA-seq data.
    Ding Q; Yang W; Luo M; Xu C; Xu Z; Pang F; Cai Y; Anashkina AA; Su X; Chen N; Jiang Q
    Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35870203
    [TBL] [Abstract][Full Text] [Related]  

  • 14. scGAC: a graph attentional architecture for clustering single-cell RNA-seq data.
    Cheng Y; Ma X
    Bioinformatics; 2022 Apr; 38(8):2187-2193. PubMed ID: 35176138
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Accurate and interpretable gene expression imputation on scRNA-seq data using IGSimpute.
    Xu K; Cheong C; Veldsman WP; Lyu A; Cheung WK; Zhang L
    Brief Bioinform; 2023 May; 24(3):. PubMed ID: 37039664
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Single-Cell RNA Sequencing (scRNA-Seq) Data Analysis of Retinal Homeostasis and Degeneration of Microglia.
    Saddala MS; Mundla S; Patyal N; Dash S
    Methods Mol Biol; 2023; 2678():91-106. PubMed ID: 37326706
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Analysis of Single-Cell Transcriptome Data in Drosophila.
    Yousefian S; Musillo MJ; Bageritz J
    Methods Mol Biol; 2022; 2540():93-111. PubMed ID: 35980574
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Scalable preprocessing for sparse scRNA-seq data exploiting prior knowledge.
    Mukherjee S; Zhang Y; Fan J; Seelig G; Kannan S
    Bioinformatics; 2018 Jul; 34(13):i124-i132. PubMed ID: 29949988
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Single-cell RNA-seq denoising using a deep count autoencoder.
    Eraslan G; Simon LM; Mircea M; Mueller NS; Theis FJ
    Nat Commun; 2019 Jan; 10(1):390. PubMed ID: 30674886
    [TBL] [Abstract][Full Text] [Related]  

  • 20. scGGAN: single-cell RNA-seq imputation by graph-based generative adversarial network.
    Huang Z; Wang J; Lu X; Mohd Zain A; Yu G
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36733262
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.