BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

137 related articles for article (PubMed ID: 37090616)

  • 1. The contributions of DNA accessibility and transcription factor occupancy to enhancer activity during cellular differentiation.
    Long T; Bhattacharyya T; Repele A; Naylor M; Nooti S; Krueger S; Manu
    bioRxiv; 2023 Apr; ():. PubMed ID: 37090616
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The contributions of DNA accessibility and transcription factor occupancy to enhancer activity during cellular differentiation.
    Long T; Bhattacharyya T; Repele A; Naylor M; Nooti S; Krueger S; Manu
    G3 (Bethesda); 2024 Feb; 14(2):. PubMed ID: 38124496
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Characterization of sequence determinants of enhancer function using natural genetic variation.
    Yang MG; Ling E; Cowley CJ; Greenberg ME; Vierbuchen T
    Elife; 2022 Aug; 11():. PubMed ID: 36043696
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Probing transcription factor combinatorics in different promoter classes and in enhancers.
    Vandel J; Cassan O; Lèbre S; Lecellier CH; Bréhélin L
    BMC Genomics; 2019 Feb; 20(1):103. PubMed ID: 30709337
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation.
    Brennan KJ; Weilert M; Krueger S; Pampari A; Liu HY; Yang AWH; Morrison JA; Hughes TR; Rushlow CA; Kundaje A; Zeitlinger J
    Dev Cell; 2023 Oct; 58(19):1898-1916.e9. PubMed ID: 37557175
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The regulatory control of Cebpa enhancers and silencers in the myeloid and red-blood cell lineages.
    Repele A; Krueger S; Bhattacharyya T; Tuineau MY; Manu
    PLoS One; 2019; 14(6):e0217580. PubMed ID: 31181110
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species.
    Huang L; Li X; Dong L; Wang B; Pan L
    BMC Biol; 2021 Sep; 19(1):189. PubMed ID: 34488759
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes.
    Jacobs J; Atkins M; Davie K; Imrichova H; Romanelli L; Christiaens V; Hulselmans G; Potier D; Wouters J; Taskiran II; Paciello G; González-Blas CB; Koldere D; Aibar S; Halder G; Aerts S
    Nat Genet; 2018 Jul; 50(7):1011-1020. PubMed ID: 29867222
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Information content differentiates enhancers from silencers in mouse photoreceptors.
    Friedman RZ; Granas DM; Myers CA; Corbo JC; Cohen BA; White MA
    Elife; 2021 Sep; 10():. PubMed ID: 34486522
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Global dynamics of stage-specific transcription factor binding during thymocyte development.
    Hosoya T; D'Oliveira Albanus R; Hensley J; Myers G; Kyono Y; Kitzman J; Parker SCJ; Engel JD
    Sci Rep; 2018 Apr; 8(1):5605. PubMed ID: 29618724
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ATAC-seq reveals regional differences in enhancer accessibility during the establishment of spatial coordinates in the
    Bozek M; Cortini R; Storti AE; Unnerstall U; Gaul U; Gompel N
    Genome Res; 2019 May; 29(5):771-783. PubMed ID: 30962180
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The native cistrome and sequence motif families of the maize ear.
    Savadel SD; Hartwig T; Turpin ZM; Vera DL; Lung PY; Sui X; Blank M; Frommer WB; Dennis JH; Zhang J; Bass HW
    PLoS Genet; 2021 Aug; 17(8):e1009689. PubMed ID: 34383745
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Atlas of regulated target genes of transcription factors (ART-TF) in human ES cells.
    Sharov AA; Nakatake Y; Wang W
    BMC Bioinformatics; 2022 Sep; 23(1):377. PubMed ID: 36114445
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ATAC-pipe: general analysis of genome-wide chromatin accessibility.
    Zuo Z; Jin Y; Zhang W; Lu Y; Li B; Qu K
    Brief Bioinform; 2019 Sep; 20(5):1934-1943. PubMed ID: 29982337
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding.
    McDowell IC; Barrera A; D'Ippolito AM; Vockley CM; Hong LK; Leichter SM; Bartelt LC; Majoros WH; Song L; Safi A; Koçak DD; Gersbach CA; Hartemink AJ; Crawford GE; Engelhardt BE; Reddy TE
    Genome Res; 2018 Sep; 28(9):1272-1284. PubMed ID: 30097539
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genome-Wide Mapping of DNA Accessibility and Binding Sites for CREB and C/EBP
    Jung HJ; Raghuram V; Lee JW; Knepper MA
    J Am Soc Nephrol; 2018 May; 29(5):1490-1500. PubMed ID: 29572403
    [No Abstract]   [Full Text] [Related]  

  • 17. Transcription factor-binding k-mer analysis clarifies the cell type dependency of binding specificities and cis-regulatory SNPs in humans.
    Tahara S; Tsuchiya T; Matsumoto H; Ozaki H
    BMC Genomics; 2023 Oct; 24(1):597. PubMed ID: 37805453
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart.
    He A; Kong SW; Ma Q; Pu WT
    Proc Natl Acad Sci U S A; 2011 Apr; 108(14):5632-7. PubMed ID: 21415370
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome-wide analysis of PDX1 target genes in human pancreatic progenitors.
    Wang X; Sterr M; Burtscher I; Chen S; Hieronimus A; Machicao F; Staiger H; Häring HU; Lederer G; Meitinger T; Cernilogar FM; Schotta G; Irmler M; Beckers J; Hrabě de Angelis M; Ray M; Wright CVE; Bakhti M; Lickert H
    Mol Metab; 2018 Mar; 9():57-68. PubMed ID: 29396371
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Epigenetic dissection of human blood group genes reveals regulatory elements and detailed characteristics of KEL and four other loci.
    Wu PC; McGowan EC; Lee YQ; Ghosh S; Hansson J; Olsson ML
    Transfusion; 2024 Jun; 64(6):1083-1096. PubMed ID: 38644556
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.