These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
267 related articles for article (PubMed ID: 37120608)
1. Reconstruction of the cell pseudo-space from single-cell RNA sequencing data with scSpace. Qian J; Liao J; Liu Z; Chi Y; Fang Y; Zheng Y; Shao X; Liu B; Cui Y; Guo W; Hu Y; Bao H; Yang P; Chen Q; Li M; Zhang B; Fan X Nat Commun; 2023 Apr; 14(1):2484. PubMed ID: 37120608 [TBL] [Abstract][Full Text] [Related]
2. Tissue RNA Integrity in Visium Spatial Protocol (Fresh Frozen Samples). Antico F; Gai M; Arigoni M Methods Mol Biol; 2023; 2584():191-203. PubMed ID: 36495450 [TBL] [Abstract][Full Text] [Related]
3. Single-Cell Sequencing Methodologies: From Transcriptome to Multi-Dimensional Measurement. Chen Y; Song J; Ruan Q; Zeng X; Wu L; Cai L; Wang X; Yang C Small Methods; 2021 Jun; 5(6):e2100111. PubMed ID: 34927917 [TBL] [Abstract][Full Text] [Related]
4. Single-cell genomics and spatial transcriptomics: Discovery of novel cell states and cellular interactions in liver physiology and disease biology. Saviano A; Henderson NC; Baumert TF J Hepatol; 2020 Nov; 73(5):1219-1230. PubMed ID: 32534107 [TBL] [Abstract][Full Text] [Related]
6. SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics. Swain AK; Pandit V; Sharma J; Yadav P Commun Biol; 2024 May; 7(1):639. PubMed ID: 38796505 [TBL] [Abstract][Full Text] [Related]
7. Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram. Biancalani T; Scalia G; Buffoni L; Avasthi R; Lu Z; Sanger A; Tokcan N; Vanderburg CR; Segerstolpe Å; Zhang M; Avraham-Davidi I; Vickovic S; Nitzan M; Ma S; Subramanian A; Lipinski M; Buenrostro J; Brown NB; Fanelli D; Zhuang X; Macosko EZ; Regev A Nat Methods; 2021 Nov; 18(11):1352-1362. PubMed ID: 34711971 [TBL] [Abstract][Full Text] [Related]
8. Encoding Method of Single-cell Spatial Transcriptomics Sequencing. Zhou Y; Jia E; Pan M; Zhao X; Ge Q Int J Biol Sci; 2020; 16(14):2663-2674. PubMed ID: 32792863 [TBL] [Abstract][Full Text] [Related]
9. SPICEMIX enables integrative single-cell spatial modeling of cell identity. Chidester B; Zhou T; Alam S; Ma J Nat Genet; 2023 Jan; 55(1):78-88. PubMed ID: 36624346 [TBL] [Abstract][Full Text] [Related]
10. Probabilistic cell/domain-type assignment of spatial transcriptomics data with SpatialAnno. Shi X; Yang Y; Ma X; Zhou Y; Guo Z; Wang C; Liu J Nucleic Acids Res; 2023 Dec; 51(22):e115. PubMed ID: 37941153 [TBL] [Abstract][Full Text] [Related]
11. Semibulk RNA-seq analysis as a convenient method for measuring gene expression statuses in a local cellular environment. Muto K; Tsuchiya I; Kim SH; Nagasawa S; Takishita M; Tsugawa K; Saito H; Komazaki Y; Torii T; Fujii T; Suzuki Y; Suzuki A; Seki M Sci Rep; 2022 Sep; 12(1):15309. PubMed ID: 36097044 [TBL] [Abstract][Full Text] [Related]
12. Reconstructing complex lineage trees from scRNA-seq data using MERLoT. Parra RG; Papadopoulos N; Ahumada-Arranz L; Kholtei JE; Mottelson N; Horokhovsky Y; Treutlein B; Soeding J Nucleic Acids Res; 2019 Sep; 47(17):8961-8974. PubMed ID: 31428793 [TBL] [Abstract][Full Text] [Related]
13. Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk. Shao X; Li C; Yang H; Lu X; Liao J; Qian J; Wang K; Cheng J; Yang P; Chen H; Xu X; Fan X Nat Commun; 2022 Jul; 13(1):4429. PubMed ID: 35908020 [TBL] [Abstract][Full Text] [Related]
14. redPATH: Reconstructing the Pseudo Development Time of Cell Lineages in Single-cell RNA-seq Data and Applications in Cancer. Xie K; Liu Z; Chen N; Chen T Genomics Proteomics Bioinformatics; 2021 Apr; 19(2):292-305. PubMed ID: 33607293 [TBL] [Abstract][Full Text] [Related]
15. Computational Analysis of Single-Cell RNA-Seq Data. Alessandrì L; Cordero F; Beccuti M; Arigoni M; Calogero RA Methods Mol Biol; 2021; 2284():289-301. PubMed ID: 33835449 [TBL] [Abstract][Full Text] [Related]
16. Accurate and efficient integrative reference-informed spatial domain detection for spatial transcriptomics. Ma Y; Zhou X Nat Methods; 2024 Jul; 21(7):1231-1244. PubMed ID: 38844627 [TBL] [Abstract][Full Text] [Related]
17. MorphoSeq: Full Single-Cell Transcriptome Dynamics Up to Gastrulation in a Chordate. Sladitschek HL; Fiuza UM; Pavlinic D; Benes V; Hufnagel L; Neveu PA Cell; 2020 May; 181(4):922-935.e21. PubMed ID: 32315617 [TBL] [Abstract][Full Text] [Related]
18. Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2. Stickels RR; Murray E; Kumar P; Li J; Marshall JL; Di Bella DJ; Arlotta P; Macosko EZ; Chen F Nat Biotechnol; 2021 Mar; 39(3):313-319. PubMed ID: 33288904 [TBL] [Abstract][Full Text] [Related]
19. Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data. Tanevski J; Nguyen T; Truong B; Karaiskos N; Ahsen ME; Zhang X; Shu C; Xu K; Liang X; Hu Y; Pham HV; Xiaomei L; Le TD; Tarca AL; Bhatti G; Romero R; Karathanasis N; Loher P; Chen Y; Ouyang Z; Mao D; Zhang Y; Zand M; Ruan J; Hafemeister C; Qiu P; Tran D; Nguyen T; Gabor A; Yu T; Guinney J; Glaab E; Krause R; Banda P; ; Stolovitzky G; Rajewsky N; Saez-Rodriguez J; Meyer P Life Sci Alliance; 2020 Nov; 3(11):. PubMed ID: 32972997 [TBL] [Abstract][Full Text] [Related]
20. Improving the performance of single-cell RNA-seq data mining based on relative expression orderings. Chen Y; Zhang H; Sun X Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36528803 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]