121 related articles for article (PubMed ID: 37141142)
21. Ragout-a reference-assisted assembly tool for bacterial genomes.
Kolmogorov M; Raney B; Paten B; Pham S
Bioinformatics; 2014 Jun; 30(12):i302-9. PubMed ID: 24931998
[TBL] [Abstract][Full Text] [Related]
22. Coverage-preserving sparsification of overlap graphs for long-read assembly.
Jain C
Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36892439
[TBL] [Abstract][Full Text] [Related]
23. BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs.
Heydari M; Miclotte G; Van de Peer Y; Fostier J
BMC Bioinformatics; 2018 Sep; 19(1):311. PubMed ID: 30180801
[TBL] [Abstract][Full Text] [Related]
24. The SAMBA tool uses long reads to improve the contiguity of genome assemblies.
Zimin AV; Salzberg SL
PLoS Comput Biol; 2022 Feb; 18(2):e1009860. PubMed ID: 35120119
[TBL] [Abstract][Full Text] [Related]
25. Real-time resolution of short-read assembly graph using ONT long reads.
Nguyen SH; Cao MD; Coin LJM
PLoS Comput Biol; 2021 Jan; 17(1):e1008586. PubMed ID: 33471816
[TBL] [Abstract][Full Text] [Related]
26. RepLong: de novo repeat identification using long read sequencing data.
Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
[TBL] [Abstract][Full Text] [Related]
27. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
Wilton R; Li X; Feinberg AP; Szalay AS
Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
[TBL] [Abstract][Full Text] [Related]
28. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
Du N; Chen J; Sun Y
BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
[TBL] [Abstract][Full Text] [Related]
29. A comprehensive review of scaffolding methods in genome assembly.
Luo J; Wei Y; Lyu M; Wu Z; Liu X; Luo H; Yan C
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33634311
[TBL] [Abstract][Full Text] [Related]
30. SGTK: a toolkit for visualization and assessment of scaffold graphs.
Kunyavskaya O; Prjibelski AD
Bioinformatics; 2019 Jul; 35(13):2303-2305. PubMed ID: 30475983
[TBL] [Abstract][Full Text] [Related]
31. SCARPA: scaffolding reads with practical algorithms.
Donmez N; Brudno M
Bioinformatics; 2013 Feb; 29(4):428-34. PubMed ID: 23274213
[TBL] [Abstract][Full Text] [Related]
32. LAMSA: fast split read alignment with long approximate matches.
Liu B; Gao Y; Wang Y
Bioinformatics; 2017 Jan; 33(2):192-201. PubMed ID: 27667793
[TBL] [Abstract][Full Text] [Related]
33. Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm.
Firtina C; Kim JS; Alser M; Senol Cali D; Cicek AE; Alkan C; Mutlu O
Bioinformatics; 2020 Jun; 36(12):3669-3679. PubMed ID: 32167530
[TBL] [Abstract][Full Text] [Related]
34. MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data.
Madoui MA; Dossat C; d'Agata L; van Oeveren J; van der Vossen E; Aury JM
BMC Bioinformatics; 2016 Mar; 17():115. PubMed ID: 26936254
[TBL] [Abstract][Full Text] [Related]
35. AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references.
Bao E; Jiang T; Girke T
Bioinformatics; 2014 Jun; 30(12):i319-i328. PubMed ID: 24932000
[TBL] [Abstract][Full Text] [Related]
36. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
[TBL] [Abstract][Full Text] [Related]
37. Minimap2: pairwise alignment for nucleotide sequences.
Li H
Bioinformatics; 2018 Sep; 34(18):3094-3100. PubMed ID: 29750242
[TBL] [Abstract][Full Text] [Related]
38. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
Lin HH; Liao YC
PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
[TBL] [Abstract][Full Text] [Related]
39. BESST--efficient scaffolding of large fragmented assemblies.
Sahlin K; Vezzi F; Nystedt B; Lundeberg J; Arvestad L
BMC Bioinformatics; 2014 Aug; 15(1):281. PubMed ID: 25128196
[TBL] [Abstract][Full Text] [Related]
40. HISEA: HIerarchical SEed Aligner for PacBio data.
Khiste N; Ilie L
BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]