BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

134 related articles for article (PubMed ID: 37142439)

  • 1. Gapless provides combined scaffolding, gap filling, and assembly correction with long reads.
    Schmeing S; Robinson MD
    Life Sci Alliance; 2023 Jul; 6(7):. PubMed ID: 37142439
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ntLink: A Toolkit for De Novo Genome Assembly Scaffolding and Mapping Using Long Reads.
    Coombe L; Warren RL; Wong J; Nikolic V; Birol I
    Curr Protoc; 2023 Apr; 3(4):e733. PubMed ID: 37039735
    [TBL] [Abstract][Full Text] [Related]  

  • 3. TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads.
    Xu M; Guo L; Gu S; Wang O; Zhang R; Peters BA; Fan G; Liu X; Xu X; Deng L; Zhang Y
    Gigascience; 2020 Sep; 9(9):. PubMed ID: 32893860
    [TBL] [Abstract][Full Text] [Related]  

  • 4. LongStitch: high-quality genome assembly correction and scaffolding using long reads.
    Coombe L; Li JX; Lo T; Wong J; Nikolic V; Warren RL; Birol I
    BMC Bioinformatics; 2021 Oct; 22(1):534. PubMed ID: 34717540
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies.
    Yang LA; Chang YJ; Chen SH; Lin CY; Ho JM
    BMC Genomics; 2019 Apr; 19(Suppl 9):238. PubMed ID: 30999844
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Benchmarking multi-platform sequencing technologies for human genome assembly.
    Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
    Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SLR: a scaffolding algorithm based on long reads and contig classification.
    Luo J; Lyu M; Chen R; Zhang X; Luo H; Yan C
    BMC Bioinformatics; 2019 Oct; 20(1):539. PubMed ID: 31666010
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The SAMBA tool uses long reads to improve the contiguity of genome assemblies.
    Zimin AV; Salzberg SL
    PLoS Comput Biol; 2022 Feb; 18(2):e1009860. PubMed ID: 35120119
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
    Lin HH; Liao YC
    PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Polishing the Oxford Nanopore long-read assemblies of bacterial pathogens with Illumina short reads to improve genomic analyses.
    Chen Z; Erickson DL; Meng J
    Genomics; 2021 May; 113(3):1366-1377. PubMed ID: 33716184
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DENTIST-using long reads for closing assembly gaps at high accuracy.
    Ludwig A; Pippel M; Myers G; Hiller M
    Gigascience; 2022 Jan; 11():. PubMed ID: 35077539
    [TBL] [Abstract][Full Text] [Related]  

  • 12. LRCstats, a tool for evaluating long reads correction methods.
    La S; Haghshenas E; Chauve C
    Bioinformatics; 2017 Nov; 33(22):3652-3654. PubMed ID: 29036421
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A spectral algorithm for fast de novo layout of uncorrected long nanopore reads.
    Recanati A; Brüls T; d'Aspremont A
    Bioinformatics; 2017 Oct; 33(20):3188-3194. PubMed ID: 28605450
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction.
    Lang J
    PLoS One; 2022; 17(5):e0267066. PubMed ID: 35594250
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
    Hotaling S; Wilcox ER; Heckenhauer J; Stewart RJ; Frandsen PB
    BMC Genomics; 2023 Mar; 24(1):117. PubMed ID: 36927511
    [TBL] [Abstract][Full Text] [Related]  

  • 16. LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.
    Warren RL; Yang C; Vandervalk BP; Behsaz B; Lagman A; Jones SJ; Birol I
    Gigascience; 2015; 4():35. PubMed ID: 26244089
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing.
    Chen Z; Erickson DL; Meng J
    Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271875
    [TBL] [Abstract][Full Text] [Related]  

  • 18. LRScaf: improving draft genomes using long noisy reads.
    Qin M; Wu S; Li A; Zhao F; Feng H; Ding L; Ruan J
    BMC Genomics; 2019 Dec; 20(1):955. PubMed ID: 31818249
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome assembly using Nanopore-guided long and error-free DNA reads.
    Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
    BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A Sequence-Based Novel Approach for Quality Evaluation of Third-Generation Sequencing Reads.
    Zhang W; Huang N; Zheng J; Liao X; Wang J; Li HD
    Genes (Basel); 2019 Jan; 10(1):. PubMed ID: 30646604
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.