152 related articles for article (PubMed ID: 37150537)
1. A workflow reproducibility scale for automatic validation of biological interpretation results.
Suetake H; Fukusato T; Igarashi T; Ohta T
Gigascience; 2022 Dec; 12():. PubMed ID: 37150537
[TBL] [Abstract][Full Text] [Related]
2. Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution.
Kluge M; Friedl MS; Menzel AL; Friedel CC
Gigascience; 2020 Jun; 9(6):. PubMed ID: 32556167
[TBL] [Abstract][Full Text] [Related]
3. Practical Computational Reproducibility in the Life Sciences.
Grüning B; Chilton J; Köster J; Dale R; Soranzo N; van den Beek M; Goecks J; Backofen R; Nekrutenko A; Taylor J
Cell Syst; 2018 Jun; 6(6):631-635. PubMed ID: 29953862
[TBL] [Abstract][Full Text] [Related]
4. Investigating reproducibility and tracking provenance - A genomic workflow case study.
Kanwal S; Khan FZ; Lonie A; Sinnott RO
BMC Bioinformatics; 2017 Jul; 18(1):337. PubMed ID: 28701218
[TBL] [Abstract][Full Text] [Related]
5. Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility.
Srivastava A; Adusumilli R; Boyce H; Garijo D; Ratnakar V; Mayani R; Yu T; Machiraju R; Gil Y; Mallick P
Pac Symp Biocomput; 2019; 24():208-219. PubMed ID: 30864323
[TBL] [Abstract][Full Text] [Related]
6. Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows.
Suetake H; Fukusato T; Igarashi T; Ohta T
Gigascience; 2022 Dec; 12():. PubMed ID: 36810800
[TBL] [Abstract][Full Text] [Related]
7. Watchdog - a workflow management system for the distributed analysis of large-scale experimental data.
Kluge M; Friedel CC
BMC Bioinformatics; 2018 Mar; 19(1):97. PubMed ID: 29534677
[TBL] [Abstract][Full Text] [Related]
8. Reproducibility of computational workflows is automated using continuous analysis.
Beaulieu-Jones BK; Greene CS
Nat Biotechnol; 2017 Apr; 35(4):342-346. PubMed ID: 28288103
[TBL] [Abstract][Full Text] [Related]
9. Classification of bioinformatics workflows using weighted versions of partitioning and hierarchical clustering algorithms.
Lord E; Diallo AB; Makarenkov V
BMC Bioinformatics; 2015 Mar; 16():68. PubMed ID: 25887434
[TBL] [Abstract][Full Text] [Related]
10. Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay.
Keefe CR; Dillon MR; Gehret E; Herman C; Jewell M; Wood CV; Bolyen E; Caporaso JG
PLoS Comput Biol; 2023 Nov; 19(11):e1011676. PubMed ID: 38011287
[TBL] [Abstract][Full Text] [Related]
11. Design considerations for workflow management systems use in production genomics research and the clinic.
Ahmed AE; Allen JM; Bhat T; Burra P; Fliege CE; Hart SN; Heldenbrand JR; Hudson ME; Istanto DD; Kalmbach MT; Kapraun GD; Kendig KI; Kendzior MC; Klee EW; Mattson N; Ross CA; Sharif SM; Venkatakrishnan R; Fadlelmola FM; Mainzer LS
Sci Rep; 2021 Nov; 11(1):21680. PubMed ID: 34737383
[TBL] [Abstract][Full Text] [Related]
12. Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection.
Ohta T; Tanjo T; Ogasawara O
Gigascience; 2019 Apr; 8(4):. PubMed ID: 31222199
[TBL] [Abstract][Full Text] [Related]
13. Provenance in bioinformatics workflows.
de Paula R; Holanda M; Gomes LS; Lifschitz S; Walter ME
BMC Bioinformatics; 2013; 14 Suppl 11(Suppl 11):S6. PubMed ID: 24564294
[TBL] [Abstract][Full Text] [Related]
14. Experiences with workflows for automating data-intensive bioinformatics.
Spjuth O; Bongcam-Rudloff E; Hernández GC; Forer L; Giovacchini M; Guimera RV; Kallio A; Korpelainen E; Kańduła MM; Krachunov M; Kreil DP; Kulev O; Łabaj PP; Lampa S; Pireddu L; Schönherr S; Siretskiy A; Vassilev D
Biol Direct; 2015 Aug; 10():43. PubMed ID: 26282399
[TBL] [Abstract][Full Text] [Related]
15. Bio-Docklets: virtualization containers for single-step execution of NGS pipelines.
Kim B; Ali T; Lijeron C; Afgan E; Krampis K
Gigascience; 2017 Aug; 6(8):1-7. PubMed ID: 28854616
[TBL] [Abstract][Full Text] [Related]
16. Biowep: a workflow enactment portal for bioinformatics applications.
Romano P; Bartocci E; Bertolini G; De Paoli F; Marra D; Mauri G; Merelli E; Milanesi L
BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S19. PubMed ID: 17430563
[TBL] [Abstract][Full Text] [Related]
17. Scalable Workflows and Reproducible Data Analysis for Genomics.
Strozzi F; Janssen R; Wurmus R; Crusoe MR; Githinji G; Di Tommaso P; Belhachemi D; Möller S; Smant G; de Ligt J; Prins P
Methods Mol Biol; 2019; 1910():723-745. PubMed ID: 31278683
[TBL] [Abstract][Full Text] [Related]
18. From the desktop to the grid: scalable bioinformatics via workflow conversion.
de la Garza L; Veit J; Szolek A; Röttig M; Aiche S; Gesing S; Reinert K; Kohlbacher O
BMC Bioinformatics; 2016 Mar; 17():127. PubMed ID: 26968893
[TBL] [Abstract][Full Text] [Related]
19. Using prototyping to choose a bioinformatics workflow management system.
Jackson M; Kavoussanakis K; Wallace EWJ
PLoS Comput Biol; 2021 Feb; 17(2):e1008622. PubMed ID: 33630841
[TBL] [Abstract][Full Text] [Related]
20. Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines.
Kulkarni N; Alessandrì L; Panero R; Arigoni M; Olivero M; Ferrero G; Cordero F; Beccuti M; Calogero RA
BMC Bioinformatics; 2018 Oct; 19(Suppl 10):349. PubMed ID: 30367595
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
