179 related articles for article (PubMed ID: 37151482)
21. CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.
Chen X; Laudeman TW; Rushton PJ; Spraggins TA; Timko MP
BMC Bioinformatics; 2007 Apr; 8():129. PubMed ID: 17445272
[TBL] [Abstract][Full Text] [Related]
22. A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach.
Proux-Wéra E; Armisén D; Byrne KP; Wolfe KH
BMC Bioinformatics; 2012 Sep; 13():237. PubMed ID: 22984983
[TBL] [Abstract][Full Text] [Related]
23. GASS: genome structural annotation for Eukaryotes based on species similarity.
Wang Y; Chen L; Song N; Lei X
BMC Genomics; 2015 Mar; 16(1):150. PubMed ID: 25764973
[TBL] [Abstract][Full Text] [Related]
24. Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3.
Han MV; Thomas GW; Lugo-Martinez J; Hahn MW
Mol Biol Evol; 2013 Aug; 30(8):1987-97. PubMed ID: 23709260
[TBL] [Abstract][Full Text] [Related]
25. MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.
Cruveiller S; Le Saux J; Vallenet D; Lajus A; Bocs S; Médigue C
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W471-9. PubMed ID: 15980515
[TBL] [Abstract][Full Text] [Related]
26. Fungal genomes: suffering with functional annotation errors.
Mohanta TK; Al-Harrasi A
IMA Fungus; 2021 Nov; 12(1):32. PubMed ID: 34724975
[TBL] [Abstract][Full Text] [Related]
27. CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.
Park J; Costanzo MC; Balakrishnan R; Cherry JM; Hong EL
Database (Oxford); 2012; 2012():bas001. PubMed ID: 22434836
[TBL] [Abstract][Full Text] [Related]
28. Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions.
Zimmer AD; Lang D; Buchta K; Rombauts S; Nishiyama T; Hasebe M; Van de Peer Y; Rensing SA; Reski R
BMC Genomics; 2013 Jul; 14():498. PubMed ID: 23879659
[TBL] [Abstract][Full Text] [Related]
29. Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method.
Maranga M; Szczerbiak P; Bezshapkin V; Gligorijevic V; Chandler C; Bonneau R; Xavier RJ; Vatanen T; Kosciolek T
mSystems; 2023 Apr; 8(2):e0117822. PubMed ID: 37010293
[TBL] [Abstract][Full Text] [Related]
30. BG7: a new approach for bacterial genome annotation designed for next generation sequencing data.
Pareja-Tobes P; Manrique M; Pareja-Tobes E; Pareja E; Tobes R
PLoS One; 2012; 7(11):e49239. PubMed ID: 23185310
[TBL] [Abstract][Full Text] [Related]
31. OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations.
Dunne MP; Kelly S
BMC Genomics; 2017 May; 18(1):390. PubMed ID: 28521726
[TBL] [Abstract][Full Text] [Related]
32. The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.
Yu C; Zavaljevski N; Desai V; Johnson S; Stevens FJ; Reifman J
BMC Bioinformatics; 2008 Jan; 9():52. PubMed ID: 18221520
[TBL] [Abstract][Full Text] [Related]
33. Global patterns of protein domain gain and loss in superkingdoms.
Nasir A; Kim KM; Caetano-Anollés G
PLoS Comput Biol; 2014 Jan; 10(1):e1003452. PubMed ID: 24499935
[TBL] [Abstract][Full Text] [Related]
34. More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology.
Wong WC; Maurer-Stroh S; Eisenhaber F
PLoS Comput Biol; 2010 Jul; 6(7):e1000867. PubMed ID: 20686689
[TBL] [Abstract][Full Text] [Related]
35. Ortholog identification in the presence of domain architecture rearrangement.
Sjölander K; Datta RS; Shen Y; Shoffner GM
Brief Bioinform; 2011 Sep; 12(5):413-22. PubMed ID: 21712343
[TBL] [Abstract][Full Text] [Related]
36. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P; Livstone MS; Lewis SE; Thomas PD
Brief Bioinform; 2011 Sep; 12(5):449-62. PubMed ID: 21873635
[TBL] [Abstract][Full Text] [Related]
37. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
Foffi G; Pastore A; Piazza F; Temussi PA
Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
[TBL] [Abstract][Full Text] [Related]
38. Reconstituting protein interaction networks using parameter-dependent domain-domain interactions.
Memišević V; Wallqvist A; Reifman J
BMC Bioinformatics; 2013 May; 14():154. PubMed ID: 23651452
[TBL] [Abstract][Full Text] [Related]
39. Using comparative genome analysis to identify problems in annotated microbial genomes.
Poptsova MS; Gogarten JP
Microbiology (Reading); 2010 Jul; 156(Pt 7):1909-1917. PubMed ID: 20430813
[TBL] [Abstract][Full Text] [Related]
40. Genome annotation assessment in Drosophila melanogaster.
Reese MG; Hartzell G; Harris NL; Ohler U; Abril JF; Lewis SE
Genome Res; 2000 Apr; 10(4):483-501. PubMed ID: 10779488
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]