BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

173 related articles for article (PubMed ID: 37151482)

  • 41. HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition.
    Bradshaw CR; Surendranath V; Henschel R; Mueller MS; Habermann BH
    PLoS One; 2011 Mar; 6(3):e17568. PubMed ID: 21423752
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Structure-Aware Mycobacterium tuberculosis Functional Annotation Uncloaks Resistance, Metabolic, and Virulence Genes.
    Modlin SJ; Elghraoui A; Gunasekaran D; Zlotnicki AM; Dillon NA; Dhillon N; Kuo N; Robinhold C; Chan CK; Baughn AD; Valafar F
    mSystems; 2021 Dec; 6(6):e0067321. PubMed ID: 34726489
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Cross-organism learning method to discover new gene functionalities.
    Domeniconi G; Masseroli M; Moro G; Pinoli P
    Comput Methods Programs Biomed; 2016 Apr; 126():20-34. PubMed ID: 26724853
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Curation of the genome annotation of Pichia pastoris (Komagataella phaffii) CBS7435 from gene level to protein function.
    Valli M; Tatto NE; Peymann A; Gruber C; Landes N; Ekker H; Thallinger GG; Mattanovich D; Gasser B; Graf AB
    FEMS Yeast Res; 2016 Sep; 16(6):. PubMed ID: 27388471
    [TBL] [Abstract][Full Text] [Related]  

  • 45. The UniProt-GO Annotation database in 2011.
    Dimmer EC; Huntley RP; Alam-Faruque Y; Sawford T; O'Donovan C; Martin MJ; Bely B; Browne P; Mun Chan W; Eberhardt R; Gardner M; Laiho K; Legge D; Magrane M; Pichler K; Poggioli D; Sehra H; Auchincloss A; Axelsen K; Blatter MC; Boutet E; Braconi-Quintaje S; Breuza L; Bridge A; Coudert E; Estreicher A; Famiglietti L; Ferro-Rojas S; Feuermann M; Gos A; Gruaz-Gumowski N; Hinz U; Hulo C; James J; Jimenez S; Jungo F; Keller G; Lemercier P; Lieberherr D; Masson P; Moinat M; Pedruzzi I; Poux S; Rivoire C; Roechert B; Schneider M; Stutz A; Sundaram S; Tognolli M; Bougueleret L; Argoud-Puy G; Cusin I; Duek-Roggli P; Xenarios I; Apweiler R
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D565-70. PubMed ID: 22123736
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomes.
    Bernardes J; Vaquero C; Carbone A
    Malar J; 2017 Jun; 16(1):241. PubMed ID: 28592293
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Plant Gene and Alternatively Spliced Variant Annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species expressed sequence tag conservation from seven plant species.
    Chen FC; Wang SS; Chaw SM; Huang YT; Chuang TJ
    Plant Physiol; 2007 Mar; 143(3):1086-95. PubMed ID: 17220363
    [TBL] [Abstract][Full Text] [Related]  

  • 48. InterPro in 2017-beyond protein family and domain annotations.
    Finn RD; Attwood TK; Babbitt PC; Bateman A; Bork P; Bridge AJ; Chang HY; Dosztányi Z; El-Gebali S; Fraser M; Gough J; Haft D; Holliday GL; Huang H; Huang X; Letunic I; Lopez R; Lu S; Marchler-Bauer A; Mi H; Mistry J; Natale DA; Necci M; Nuka G; Orengo CA; Park Y; Pesseat S; Piovesan D; Potter SC; Rawlings ND; Redaschi N; Richardson L; Rivoire C; Sangrador-Vegas A; Sigrist C; Sillitoe I; Smithers B; Squizzato S; Sutton G; Thanki N; Thomas PD; Tosatto SC; Wu CH; Xenarios I; Yeh LS; Young SY; Mitchell AL
    Nucleic Acids Res; 2017 Jan; 45(D1):D190-D199. PubMed ID: 27899635
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Automated alignment-based curation of gene models in filamentous fungi.
    van der Burgt A; Severing E; Collemare J; de Wit PJ
    BMC Bioinformatics; 2014 Jan; 15():19. PubMed ID: 24433567
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.
    Makarova KS; Sorokin AV; Novichkov PS; Wolf YI; Koonin EV
    Biol Direct; 2007 Nov; 2():33. PubMed ID: 18042280
    [TBL] [Abstract][Full Text] [Related]  

  • 51. The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
    Camon E; Magrane M; Barrell D; Lee V; Dimmer E; Maslen J; Binns D; Harte N; Lopez R; Apweiler R
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D262-6. PubMed ID: 14681408
    [TBL] [Abstract][Full Text] [Related]  

  • 52. An alignment-free domain architecture similarity search (ADASS) algorithm for inferring homology between multi-domain proteins.
    Syamaladevi DP; Joshi A; Sowdhamini R
    Bioinformation; 2013; 9(10):491-9. PubMed ID: 23861564
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Intron losses and gains in the nematodes.
    Ma MY; Xia J; Shu KX; Niu DK
    Biol Direct; 2022 Jun; 17(1):13. PubMed ID: 35659725
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach.
    Rodríguez-Ortega MJ; Luque I; Tarradas C; Bárcena JA
    BMC Genomics; 2008 Dec; 9():588. PubMed ID: 19061494
    [TBL] [Abstract][Full Text] [Related]  

  • 55. PCAS--a precomputed proteome annotation database resource.
    Zhang Y; Yin Y; Chen Y; Gao G; Yu P; Luo J; Jiang Y
    BMC Genomics; 2003 Nov; 4(1):42. PubMed ID: 14594458
    [TBL] [Abstract][Full Text] [Related]  

  • 56. A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants.
    Pilkington SM; Crowhurst R; Hilario E; Nardozza S; Fraser L; Peng Y; Gunaseelan K; Simpson R; Tahir J; Deroles SC; Templeton K; Luo Z; Davy M; Cheng C; McNeilage M; Scaglione D; Liu Y; Zhang Q; Datson P; De Silva N; Gardiner SE; Bassett H; Chagné D; McCallum J; Dzierzon H; Deng C; Wang YY; Barron L; Manako K; Bowen J; Foster TM; Erridge ZA; Tiffin H; Waite CN; Davies KM; Grierson EP; Laing WA; Kirk R; Chen X; Wood M; Montefiori M; Brummell DA; Schwinn KE; Catanach A; Fullerton C; Li D; Meiyalaghan S; Nieuwenhuizen N; Read N; Prakash R; Hunter D; Zhang H; McKenzie M; Knäbel M; Harris A; Allan AC; Gleave A; Chen A; Janssen BJ; Plunkett B; Ampomah-Dwamena C; Voogd C; Leif D; Lafferty D; Souleyre EJF; Varkonyi-Gasic E; Gambi F; Hanley J; Yao JL; Cheung J; David KM; Warren B; Marsh K; Snowden KC; Lin-Wang K; Brian L; Martinez-Sanchez M; Wang M; Ileperuma N; Macnee N; Campin R; McAtee P; Drummond RSM; Espley RV; Ireland HS; Wu R; Atkinson RG; Karunairetnam S; Bulley S; Chunkath S; Hanley Z; Storey R; Thrimawithana AH; Thomson S; David C; Testolin R; Huang H; Hellens RP; Schaffer RJ
    BMC Genomics; 2018 Apr; 19(1):257. PubMed ID: 29661190
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.
    Costanzo MC; Park J; Balakrishnan R; Cherry JM; Hong EL
    Database (Oxford); 2011; 2011():bar004. PubMed ID: 21411447
    [TBL] [Abstract][Full Text] [Related]  

  • 58. TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes.
    Ivanov M; Sandelin A; Marquardt S
    BMC Bioinformatics; 2021 May; 22(1):290. PubMed ID: 34058980
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.
    Milanesi L; Petrillo M; Sepe L; Boccia A; D'Agostino N; Passamano M; Di Nardo S; Tasco G; Casadio R; Paolella G
    BMC Bioinformatics; 2005 Dec; 6 Suppl 4(Suppl 4):S20. PubMed ID: 16351747
    [TBL] [Abstract][Full Text] [Related]  

  • 60.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.