These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

118 related articles for article (PubMed ID: 37154701)

  • 1. STEMSIM: a simulator of within-strain short-term evolutionary mutations for longitudinal metagenomic data.
    Zhou B; Li H
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37154701
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Tamock: simulation of habitat-specific benchmark data in metagenomics.
    Gerner SM; Graf AB; Rattei T
    BMC Bioinformatics; 2021 May; 22(1):227. PubMed ID: 33932979
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CAMISIM: simulating metagenomes and microbial communities.
    Fritz A; Hofmann P; Majda S; Dahms E; Dröge J; Fiedler J; Lesker TR; Belmann P; DeMaere MZ; Darling AE; Sczyrba A; Bremges A; McHardy AC
    Microbiome; 2019 Feb; 7(1):17. PubMed ID: 30736849
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High-resolution strain-level microbiome composition analysis from short reads.
    Liao H; Ji Y; Sun Y
    Microbiome; 2023 Aug; 11(1):183. PubMed ID: 37587527
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data.
    Plaza Oñate F; Le Chatelier E; Almeida M; Cervino ACL; Gauthier F; Magoulès F; Ehrlich SD; Pichaud M
    Bioinformatics; 2019 May; 35(9):1544-1552. PubMed ID: 30252023
    [TBL] [Abstract][Full Text] [Related]  

  • 6. LMAS: evaluating metagenomic short de novo assembly methods through defined communities.
    Mendes CI; Vila-Cerqueira P; Motro Y; Moran-Gilad J; Carriço JA; Ramirez M
    Gigascience; 2022 Dec; 12():. PubMed ID: 36576131
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Capturing variation in metagenomic assembly graphs with MetaCortex.
    Martin S; Ayling M; Patrono L; Caccamo M; Murcia P; Leggett RM
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36722204
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.
    Wang Z; Wang Y; Fuhrman JA; Sun F; Zhu S
    Brief Bioinform; 2020 May; 21(3):777-790. PubMed ID: 30860572
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data.
    Ranjan P; Brown CA; Erb-Downward JR; Dickson RP
    Bioinformatics; 2022 Aug; 38(15):3830-3832. PubMed ID: 35695743
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MetaSim: a sequencing simulator for genomics and metagenomics.
    Richter DC; Ott F; Auch AF; Schmid R; Huson DH
    PLoS One; 2008 Oct; 3(10):e3373. PubMed ID: 18841204
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MetaBMF: a scalable binning algorithm for large-scale reference-free metagenomic studies.
    Ma T; Xiao D; Xing X
    Bioinformatics; 2020 Jan; 36(2):356-363. PubMed ID: 31347687
    [TBL] [Abstract][Full Text] [Related]  

  • 12. OGRE: Overlap Graph-based metagenomic Read clustEring.
    Balvert M; Luo X; Hauptfeld E; Schönhuth A; Dutilh BE
    Bioinformatics; 2021 May; 37(7):905-912. PubMed ID: 32871010
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics.
    Arikawa K; Ide K; Kogawa M; Saeki T; Yoda T; Endoh T; Matsuhashi A; Takeyama H; Hosokawa M
    Microbiome; 2021 Oct; 9(1):202. PubMed ID: 34641955
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GraphBin: refined binning of metagenomic contigs using assembly graphs.
    Mallawaarachchi V; Wickramarachchi A; Lin Y
    Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Phigaro: high-throughput prophage sequence annotation.
    Starikova EV; Tikhonova PO; Prianichnikov NA; Rands CM; Zdobnov EM; Ilina EN; Govorun VM
    Bioinformatics; 2020 Jun; 36(12):3882-3884. PubMed ID: 32311023
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MIDAS2: Metagenomic Intra-species Diversity Analysis System.
    Zhao C; Dimitrov B; Goldman M; Nayfach S; Pollard KS
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36321886
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assessment of metagenomic assembly using simulated next generation sequencing data.
    Mende DR; Waller AS; Sunagawa S; Järvelin AI; Chan MM; Arumugam M; Raes J; Bork P
    PLoS One; 2012; 7(2):e31386. PubMed ID: 22384016
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
    Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
    Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Metaviral SPAdes: assembly of viruses from metagenomic data.
    Antipov D; Raiko M; Lapidus A; Pevzner PA
    Bioinformatics; 2020 Aug; 36(14):4126-4129. PubMed ID: 32413137
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.