133 related articles for article (PubMed ID: 37155831)
1. Error analysis of the PacBio sequencing CCS reads.
Pourmohammadi R; Abouei J; Anpalagan A
Int J Biostat; 2023 Nov; 19(2):439-453. PubMed ID: 37155831
[TBL] [Abstract][Full Text] [Related]
2. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
[TBL] [Abstract][Full Text] [Related]
3. Comparison of ONT and CCS sequencing technologies on the polyploid genome of a medicinal plant showed that high error rate of ONT reads are not suitable for self-correction.
Zeng P; Tian Z; Han Y; Zhang W; Zhou T; Peng Y; Hu H; Cai J
Chin Med; 2022 Aug; 17(1):94. PubMed ID: 35945546
[TBL] [Abstract][Full Text] [Related]
4. NPBSS: a new PacBio sequencing simulator for generating the continuous long reads with an empirical model.
Wei ZG; Zhang SW
BMC Bioinformatics; 2018 May; 19(1):177. PubMed ID: 29788930
[TBL] [Abstract][Full Text] [Related]
5. A Sequence-Based Novel Approach for Quality Evaluation of Third-Generation Sequencing Reads.
Zhang W; Huang N; Zheng J; Liao X; Wang J; Li HD
Genes (Basel); 2019 Jan; 10(1):. PubMed ID: 30646604
[TBL] [Abstract][Full Text] [Related]
6. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore.
Lang D; Zhang S; Ren P; Liang F; Sun Z; Meng G; Tan Y; Li X; Lai Q; Han L; Wang D; Hu F; Wang W; Liu S
Gigascience; 2020 Dec; 9(12):. PubMed ID: 33319909
[TBL] [Abstract][Full Text] [Related]
7. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
Du N; Chen J; Sun Y
BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
[TBL] [Abstract][Full Text] [Related]
8. PaSS: a sequencing simulator for PacBio sequencing.
Zhang W; Jia B; Wei C
BMC Bioinformatics; 2019 Jun; 20(1):352. PubMed ID: 31226925
[TBL] [Abstract][Full Text] [Related]
9. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
10. DNA 5-methylcytosine detection and methylation phasing using PacBio circular consensus sequencing.
Ni P; Nie F; Zhong Z; Xu J; Huang N; Zhang J; Zhao H; Zou Y; Huang Y; Li J; Xiao CL; Luo F; Wang J
Nat Commun; 2023 Jul; 14(1):4054. PubMed ID: 37422489
[TBL] [Abstract][Full Text] [Related]
11. Comparing assembly strategies for third-generation sequencing technologies across different genomes.
Espinosa E; Bautista R; Fernandez I; Larrosa R; Zapata EL; Plata O
Genomics; 2023 Sep; 115(5):110700. PubMed ID: 37598732
[TBL] [Abstract][Full Text] [Related]
12. A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.
Das AK; Goswami S; Lee K; Park SJ
BMC Genomics; 2019 Dec; 20(Suppl 11):948. PubMed ID: 31856721
[TBL] [Abstract][Full Text] [Related]
13. A Benchmark Study on Error Assessment and Quality Control of CCS Reads Derived from the PacBio RS.
Jiao X; Zheng X; Ma L; Kutty G; Gogineni E; Sun Q; Sherman BT; Hu X; Jones K; Raley C; Tran B; Munroe DJ; Stephens R; Liang D; Imamichi T; Kovacs JA; Lempicki RA; Huang DW
J Data Mining Genomics Proteomics; 2013 Jul; 4(3):. PubMed ID: 24179701
[TBL] [Abstract][Full Text] [Related]
14. Comparison of long-read sequencing technologies in interrogating bacteria and fly genomes.
Tvedte ES; Gasser M; Sparklin BC; Michalski J; Hjelmen CE; Johnston JS; Zhao X; Bromley R; Tallon LJ; Sadzewicz L; Rasko DA; Dunning Hotopp JC
G3 (Bethesda); 2021 Jun; 11(6):. PubMed ID: 33768248
[TBL] [Abstract][Full Text] [Related]
15. Initial Analysis of Structural Variation Detections in Cattle Using Long-Read Sequencing Methods.
Gao Y; Ma L; Liu GE
Genes (Basel); 2022 May; 13(5):. PubMed ID: 35627213
[TBL] [Abstract][Full Text] [Related]
16. Benchmarking multi-platform sequencing technologies for human genome assembly.
Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
[TBL] [Abstract][Full Text] [Related]
17. Genome assembly using Nanopore-guided long and error-free DNA reads.
Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
[TBL] [Abstract][Full Text] [Related]
18. Polishing the Oxford Nanopore long-read assemblies of bacterial pathogens with Illumina short reads to improve genomic analyses.
Chen Z; Erickson DL; Meng J
Genomics; 2021 May; 113(3):1366-1377. PubMed ID: 33716184
[TBL] [Abstract][Full Text] [Related]
19. Efficient and accurate whole genome assembly and methylome profiling of E. coli.
Powers JG; Weigman VJ; Shu J; Pufky JM; Cox D; Hurban P
BMC Genomics; 2013 Oct; 14(1):675. PubMed ID: 24090403
[TBL] [Abstract][Full Text] [Related]
20. Oxford Nanopore MinION Sequencing and Genome Assembly.
Lu H; Giordano F; Ning Z
Genomics Proteomics Bioinformatics; 2016 Oct; 14(5):265-279. PubMed ID: 27646134
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
