These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

136 related articles for article (PubMed ID: 37158246)

  • 21. NORMA: a tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps.
    Suhre K; Navaza J; Sanejouand YH
    Acta Crystallogr D Biol Crystallogr; 2006 Sep; 62(Pt 9):1098-100. PubMed ID: 16929111
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Predicting pK(a) values of substituted phenols from atomic charges: comparison of different quantum mechanical methods and charge distribution schemes.
    Svobodová Vareková R; Geidl S; Ionescu CM; Skrehota O; Kudera M; Sehnal D; Bouchal T; Abagyan R; Huber HJ; Koca J
    J Chem Inf Model; 2011 Aug; 51(8):1795-806. PubMed ID: 21761919
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein Superfamilies.
    Suplatov D; Sharapova Y; Švedas V
    Methods Mol Biol; 2021; 2231():179-200. PubMed ID: 33289894
    [TBL] [Abstract][Full Text] [Related]  

  • 24. On contribution of known atomic partial charges of protein backbone in electrostatic potential density maps.
    Wang J
    Protein Sci; 2017 Jun; 26(6):1098-1104. PubMed ID: 28370507
    [TBL] [Abstract][Full Text] [Related]  

  • 25. RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances.
    Bittrich S; Bhikadiya C; Bi C; Chao H; Duarte JM; Dutta S; Fayazi M; Henry J; Khokhriakov I; Lowe R; Piehl DW; Segura J; Vallat B; Voigt M; Westbrook JD; Burley SK; Rose Y
    J Mol Biol; 2023 Jul; 435(14):167994. PubMed ID: 36738985
    [TBL] [Abstract][Full Text] [Related]  

  • 26. The AUDANA algorithm for automated protein 3D structure determination from NMR NOE data.
    Lee W; Petit CM; Cornilescu G; Stark JL; Markley JL
    J Biomol NMR; 2016 Jun; 65(2):51-7. PubMed ID: 27169728
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Calculations of the charge distribution in dodecyltrimethylammonium: a quantum chemical investigation.
    Minisini B; Chavand S; Barthelery R; Tsobnang F
    J Mol Model; 2010 Jun; 16(6):1085-92. PubMed ID: 19924450
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Quality assessment of protein model-structures based on structural and functional similarities.
    Konopka BM; Nebel JC; Kotulska M
    BMC Bioinformatics; 2012 Sep; 13():242. PubMed ID: 22998498
    [TBL] [Abstract][Full Text] [Related]  

  • 29. A modified electronegativity equalization method for fast and accurate calculation of atomic charges in large biological molecules.
    Ouyang Y; Ye F; Liang Y
    Phys Chem Chem Phys; 2009 Aug; 11(29):6082-9. PubMed ID: 19606317
    [TBL] [Abstract][Full Text] [Related]  

  • 30. MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update).
    Pravda L; Sehnal D; Toušek D; Navrátilová V; Bazgier V; Berka K; Svobodová Vareková R; Koca J; Otyepka M
    Nucleic Acids Res; 2018 Jul; 46(W1):W368-W373. PubMed ID: 29718451
    [TBL] [Abstract][Full Text] [Related]  

  • 31. TRITON: in silico construction of protein mutants and prediction of their activities.
    Prokop M; Damborský J; Koca J
    Bioinformatics; 2000 Sep; 16(9):845-6. PubMed ID: 11187152
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
    Bagos PG; Liakopoulos TD; Hamodrakas SJ
    BMC Bioinformatics; 2005 Jan; 6():7. PubMed ID: 15647112
    [TBL] [Abstract][Full Text] [Related]  

  • 33. APACE: AlphaFold2 and advanced computing as a service for accelerated discovery in biophysics.
    Park H; Patel P; Haas R; Huerta EA
    Proc Natl Acad Sci U S A; 2024 Jul; 121(27):e2311888121. PubMed ID: 38913887
    [TBL] [Abstract][Full Text] [Related]  

  • 34. CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures.
    Chovancova E; Pavelka A; Benes P; Strnad O; Brezovsky J; Kozlikova B; Gora A; Sustr V; Klvana M; Medek P; Biedermannova L; Sochor J; Damborsky J
    PLoS Comput Biol; 2012; 8(10):e1002708. PubMed ID: 23093919
    [TBL] [Abstract][Full Text] [Related]  

  • 35. DeepChargePredictor: a web server for predicting QM-based atomic charges via state-of-the-art machine-learning algorithms.
    Wang J; Sun H; Chen J; Jiang D; Wang Z; Wu Z; Chen X; Cao D; Hou T
    Bioinformatics; 2021 Nov; 37(22):4255-4257. PubMed ID: 34009308
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Evaluation of Deep Neural Network ProSPr for Accurate Protein Distance Predictions on CASP14 Targets.
    Stern J; Hedelius B; Fisher O; Billings WM; Della Corte D
    Int J Mol Sci; 2021 Nov; 22(23):. PubMed ID: 34884640
    [TBL] [Abstract][Full Text] [Related]  

  • 37. The AlphaFold Database of Protein Structures: A Biologist's Guide.
    David A; Islam S; Tankhilevich E; Sternberg MJE
    J Mol Biol; 2022 Jan; 434(2):167336. PubMed ID: 34757056
    [TBL] [Abstract][Full Text] [Related]  

  • 38. A model binding site for testing scoring functions in molecular docking.
    Wei BQ; Baase WA; Weaver LH; Matthews BW; Shoichet BK
    J Mol Biol; 2002 Sep; 322(2):339-55. PubMed ID: 12217695
    [TBL] [Abstract][Full Text] [Related]  

  • 39. PhyreRisk: A Dynamic Web Application to Bridge Genomics, Proteomics and 3D Structural Data to Guide Interpretation of Human Genetic Variants.
    Ofoegbu TC; David A; Kelley LA; Mezulis S; Islam SA; Mersmann SF; Strömich L; Vakser IA; Houlston RS; Sternberg MJE
    J Mol Biol; 2019 Jun; 431(13):2460-2466. PubMed ID: 31075275
    [TBL] [Abstract][Full Text] [Related]  

  • 40. AlphaFold Models of Small Proteins Rival the Accuracy of Solution NMR Structures.
    Tejero R; Huang YJ; Ramelot TA; Montelione GT
    Front Mol Biosci; 2022; 9():877000. PubMed ID: 35769913
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.