151 related articles for article (PubMed ID: 37160995)
1. Streamlined quantitative analysis of histone modification abundance at nucleosome-scale resolution with siQ-ChIP version 2.0.
Dickson BM; Kupai A; Vaughan RM; Rothbart SB
Sci Rep; 2023 May; 13(1):7508. PubMed ID: 37160995
[TBL] [Abstract][Full Text] [Related]
2. Analysis of histone antibody specificity directly in sequencing data using siQ-ChIP.
Kupai A; Vaughan RM; Rothbart SB; Dickson BM
bioRxiv; 2023 Mar; ():. PubMed ID: 36945621
[TBL] [Abstract][Full Text] [Related]
3. A physical basis for quantitative ChIP-sequencing.
Dickson BM; Tiedemann RL; Chomiak AA; Cornett EM; Vaughan RM; Rothbart SB
J Biol Chem; 2020 Nov; 295(47):15826-15837. PubMed ID: 32994221
[TBL] [Abstract][Full Text] [Related]
4. Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications.
Grzybowski AT; Shah RN; Richter WF; Ruthenburg AJ
Nat Protoc; 2019 Dec; 14(12):3275-3302. PubMed ID: 31723301
[TBL] [Abstract][Full Text] [Related]
5. Generation of Native Chromatin Immunoprecipitation Sequencing Libraries for Nucleosome Density Analysis.
Lorzadeh A; Lopez Gutierrez R; Jackson L; Moksa M; Hirst M
J Vis Exp; 2017 Dec; (130):. PubMed ID: 29286469
[TBL] [Abstract][Full Text] [Related]
6. Quantitative Comparison of Multiple Chromatin Immunoprecipitation-Sequencing (ChIP-seq) Experiments with spikChIP.
Blanco E; Ballaré C; Di Croce L; Aranda S
Methods Mol Biol; 2023; 2624():55-72. PubMed ID: 36723809
[TBL] [Abstract][Full Text] [Related]
7. ChIPseqSpikeInFree: a ChIP-seq normalization approach to reveal global changes in histone modifications without spike-in.
Jin H; Kasper LH; Larson JD; Wu G; Baker SJ; Zhang J; Fan Y
Bioinformatics; 2020 Feb; 36(4):1270-1272. PubMed ID: 31566663
[TBL] [Abstract][Full Text] [Related]
8. NUCLIZE for quantifying epigenome: generating histone modification data at single-nucleosome resolution using genuine nucleosome positions.
Zheng D; Trynda J; Sun Z; Li Z
BMC Genomics; 2019 Jul; 20(1):541. PubMed ID: 31266464
[TBL] [Abstract][Full Text] [Related]
9. Protocol to apply spike-in ChIP-seq to capture massive histone acetylation in human cells.
Wu D; Wang L; Huang H
STAR Protoc; 2021 Sep; 2(3):100681. PubMed ID: 34337446
[TBL] [Abstract][Full Text] [Related]
10. Chromatin Immunoprecipitation Sequencing (ChIP-seq) for Detecting Histone Modifications and Modifiers.
Hino S; Sato T; Nakao M
Methods Mol Biol; 2023; 2577():55-64. PubMed ID: 36173565
[TBL] [Abstract][Full Text] [Related]
11. Multiplexed ChIP-Seq Using Direct Nucleosome Barcoding: A Tool for High-Throughput Chromatin Analysis.
Chabbert CD; Adjalley SH; Steinmetz LM; Pelechano V
Methods Mol Biol; 2018; 1689():177-194. PubMed ID: 29027175
[TBL] [Abstract][Full Text] [Related]
12. Chromatin Immunoprecipitation Sequencing (ChIP-seq) Protocol for Small Amounts of Frozen Biobanked Cardiac Tissue.
Pei J; van den Dungen NAM; Asselbergs FW; Mokry M; Harakalova M
Methods Mol Biol; 2022; 2458():97-111. PubMed ID: 35103964
[TBL] [Abstract][Full Text] [Related]
13. A cell-sorting-based protocol for cell cycle small-scale ChIP sequencing.
Whetstine JR; Van Rechem C
STAR Protoc; 2022 Jun; 3(2):101243. PubMed ID: 35310076
[TBL] [Abstract][Full Text] [Related]
14. cChIP-seq: a robust small-scale method for investigation of histone modifications.
Valensisi C; Liao JL; Andrus C; Battle SL; Hawkins RD
BMC Genomics; 2015 Dec; 16():1083. PubMed ID: 26692029
[TBL] [Abstract][Full Text] [Related]
15. Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq.
Johannes F; Wardenaar R; Colomé-Tatché M; Mousson F; de Graaf P; Mokry M; Guryev V; Timmers HT; Cuppen E; Jansen RC
Bioinformatics; 2010 Apr; 26(8):1000-6. PubMed ID: 20208068
[TBL] [Abstract][Full Text] [Related]
16. Using ChIP-seq technology to generate high-resolution profiles of histone modifications.
O'Geen H; Echipare L; Farnham PJ
Methods Mol Biol; 2011; 791():265-86. PubMed ID: 21913086
[TBL] [Abstract][Full Text] [Related]
17. Genome-wide analysis of histone modifications by ChIP-on-chip.
Huebert DJ; Kamal M; O'Donovan A; Bernstein BE
Methods; 2006 Dec; 40(4):365-9. PubMed ID: 17101450
[TBL] [Abstract][Full Text] [Related]
18. A Semiautomated ChIP-Seq Procedure for Large-scale Epigenetic Studies.
Cayford J; Herrera-da la Mata S; Schmiedel BJ; Chandra V; Vijayanand P; Seumois G
J Vis Exp; 2020 Aug; (162):. PubMed ID: 32865528
[TBL] [Abstract][Full Text] [Related]
19. Decoding the protein composition of whole nucleosomes with Nuc-MS.
Schachner LF; Jooß K; Morgan MA; Piunti A; Meiners MJ; Kafader JO; Lee AS; Iwanaszko M; Cheek MA; Burg JM; Howard SA; Keogh MC; Shilatifard A; Kelleher NL
Nat Methods; 2021 Mar; 18(3):303-308. PubMed ID: 33589837
[TBL] [Abstract][Full Text] [Related]
20. Histone Modification Analysis of Low-Mappability Regions.
Yoshizawa-Sugata N; Masai H
Methods Mol Biol; 2023; 2519():163-185. PubMed ID: 36066721
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
