BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

124 related articles for article (PubMed ID: 37163020)

  • 1. A Gold Standard for Transcription Factor Regulatory Interactions in
    Lara P; Gama-Castro S; Salgado H; Rioualen C; Tierrafría VH; Muñiz-Rascado LJ; Bonavides-Martínez C; Collado-Vides J
    bioRxiv; 2023 Dec; ():. PubMed ID: 37163020
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in
    Tierrafría VH; Rioualen C; Salgado H; Lara P; Gama-Castro S; Lally P; Gómez-Romero L; Peña-Loredo P; López-Almazo AG; Alarcón-Carranza G; Betancourt-Figueroa F; Alquicira-Hernández S; Polanco-Morelos JE; García-Sotelo J; Gaytan-Nuñez E; Méndez-Cruz CF; Muñiz LJ; Bonavides-Martínez C; Moreno-Hagelsieb G; Galagan JE; Wade JT; Collado-Vides J
    Microb Genom; 2022 May; 8(5):. PubMed ID: 35584008
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0.
    Santos-Zavaleta A; Sánchez-Pérez M; Salgado H; Velázquez-Ramírez DA; Gama-Castro S; Tierrafría VH; Busby SJW; Aquino P; Fang X; Palsson BO; Galagan JE; Collado-Vides J
    BMC Biol; 2018 Aug; 16(1):91. PubMed ID: 30115066
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12.
    Santos-Zavaleta A; Salgado H; Gama-Castro S; Sánchez-Pérez M; Gómez-Romero L; Ledezma-Tejeida D; García-Sotelo JS; Alquicira-Hernández K; Muñiz-Rascado LJ; Peña-Loredo P; Ishida-Gutiérrez C; Velázquez-Ramírez DA; Del Moral-Chávez V; Bonavides-Martínez C; Méndez-Cruz CF; Galagan J; Collado-Vides J
    Nucleic Acids Res; 2019 Jan; 47(D1):D212-D220. PubMed ID: 30395280
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The comprehensive updated regulatory network of Escherichia coli K-12.
    Salgado H; Santos-Zavaleta A; Gama-Castro S; Peralta-Gil M; Peñaloza-Spínola MI; Martínez-Antonio A; Karp PD; Collado-Vides J
    BMC Bioinformatics; 2006 Jan; 7():5. PubMed ID: 16398937
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evidence classification of high-throughput protocols and confidence integration in RegulonDB.
    Weiss V; Medina-Rivera A; Huerta AM; Santos-Zavaleta A; Salgado H; Morett E; Collado-Vides J
    Database (Oxford); 2013; 2013():bas059. PubMed ID: 23327937
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.
    Salgado H; Peralta-Gil M; Gama-Castro S; Santos-Zavaleta A; Muñiz-Rascado L; García-Sotelo JS; Weiss V; Solano-Lira H; Martínez-Flores I; Medina-Rivera A; Salgado-Osorio G; Alquicira-Hernández S; Alquicira-Hernández K; López-Fuentes A; Porrón-Sotelo L; Huerta AM; Bonavides-Martínez C; Balderas-Martínez YI; Pannier L; Olvera M; Labastida A; Jiménez-Jacinto V; Vega-Alvarado L; Del Moral-Chávez V; Hernández-Alvarez A; Morett E; Collado-Vides J
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D203-13. PubMed ID: 23203884
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DAP-Seq Identification of Transcription Factor-Binding Sites in Potato.
    Franco-Zorrilla JM; Prat S
    Methods Mol Biol; 2021; 2354():123-142. PubMed ID: 34448158
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.
    Gama-Castro S; Jiménez-Jacinto V; Peralta-Gil M; Santos-Zavaleta A; Peñaloza-Spinola MI; Contreras-Moreira B; Segura-Salazar J; Muñiz-Rascado L; Martínez-Flores I; Salgado H; Bonavides-Martínez C; Abreu-Goodger C; Rodríguez-Penagos C; Miranda-Ríos J; Morett E; Merino E; Huerta AM; Treviño-Quintanilla L; Collado-Vides J
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D120-4. PubMed ID: 18158297
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).
    Gama-Castro S; Salgado H; Peralta-Gil M; Santos-Zavaleta A; Muñiz-Rascado L; Solano-Lira H; Jimenez-Jacinto V; Weiss V; García-Sotelo JS; López-Fuentes A; Porrón-Sotelo L; Alquicira-Hernández S; Medina-Rivera A; Martínez-Flores I; Alquicira-Hernández K; Martínez-Adame R; Bonavides-Martínez C; Miranda-Ríos J; Huerta AM; Mendoza-Vargas A; Collado-Torres L; Taboada B; Vega-Alvarado L; Olvera M; Olvera L; Grande R; Morett E; Collado-Vides J
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D98-105. PubMed ID: 21051347
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Using RegulonDB, the Escherichia coli K-12 Gene Regulatory Transcriptional Network Database.
    Salgado H; Martínez-Flores I; Bustamante VH; Alquicira-Hernández K; García-Sotelo JS; García-Alonso D; Collado-Vides J
    Curr Protoc Bioinformatics; 2018 Mar; 61(1):1.32.1-1.32.30. PubMed ID: 30040192
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.
    Mundade R; Ozer HG; Wei H; Prabhu L; Lu T
    Cell Cycle; 2014; 13(18):2847-52. PubMed ID: 25486472
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Transcription factor-binding k-mer analysis clarifies the cell type dependency of binding specificities and cis-regulatory SNPs in humans.
    Tahara S; Tsuchiya T; Matsumoto H; Ozaki H
    BMC Genomics; 2023 Oct; 24(1):597. PubMed ID: 37805453
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.
    Crider K; Williams J; Qi YP; Gutman J; Yeung L; Mai C; Finkelstain J; Mehta S; Pons-Duran C; Menéndez C; Moraleda C; Rogers L; Daniels K; Green P
    Cochrane Database Syst Rev; 2022 Feb; 2(2022):. PubMed ID: 36321557
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Precise Identification of DNA-Binding Proteins Genomic Location by Exonuclease Coupled Chromatin Immunoprecipitation (ChIP-exo).
    Matteau D; Rodrigue S
    Methods Mol Biol; 2015; 1334():173-93. PubMed ID: 26404150
    [TBL] [Abstract][Full Text] [Related]  

  • 16. C4S DB: Comprehensive Collection and Comparison for ChIP-Seq Database.
    Anzawa H; Kinoshita K
    J Mol Biol; 2023 Jul; 435(14):168157. PubMed ID: 37244568
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12.
    Salgado H; Gama-Castro S; Martínez-Antonio A; Díaz-Peredo E; Sánchez-Solano F; Peralta-Gil M; Garcia-Alonso D; Jiménez-Jacinto V; Santos-Zavaleta A; Bonavides-Martínez C; Collado-Vides J
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D303-6. PubMed ID: 14681419
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comprehensive investigation of the gene expression system regulated by an Aspergillus oryzae transcription factor XlnR using integrated mining of gSELEX-Seq and microarray data.
    Oka H; Kojima T; Ihara K; Kobayashi T; Nakano H
    BMC Genomics; 2019 Jan; 20(1):16. PubMed ID: 30621576
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Whole set of constitutive promoters for RpoN sigma factor and the regulatory role of its enhancer protein NtrC in
    Shimada T; Furuhata S; Ishihama A
    Microb Genom; 2021 Nov; 7(11):. PubMed ID: 34787538
    [TBL] [Abstract][Full Text] [Related]  

  • 20. dPeak: high resolution identification of transcription factor binding sites from PET and SET ChIP-Seq data.
    Chung D; Park D; Myers K; Grass J; Kiley P; Landick R; Keleş S
    PLoS Comput Biol; 2013; 9(10):e1003246. PubMed ID: 24146601
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.