BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

148 related articles for article (PubMed ID: 37166657)

  • 1. SHAPE to Probe RNA Structure and RNA-Protein Interactions In Vitro.
    Saha K; Ghosh G
    Methods Mol Biol; 2023; 2666():69-80. PubMed ID: 37166657
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA.
    Steen KA; Siegfried NA; Weeks KM
    Nat Protoc; 2011 Oct; 6(11):1683-94. PubMed ID: 21979276
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Use of SHAPE to select 2AP substitution sites for RNA-ligand interactions and dynamics studies.
    Soulière MF; Micura R
    Methods Mol Biol; 2014; 1103():227-39. PubMed ID: 24318898
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Using 5'
    Garfio CM; Gupta M; Spitale RC
    Curr Protoc; 2023 Jul; 3(7):e830. PubMed ID: 37471570
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq).
    Watters KE; Lucks JB
    Methods Mol Biol; 2016; 1490():135-62. PubMed ID: 27665597
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Exploring RNA structural codes with SHAPE chemistry.
    Weeks KM; Mauger DM
    Acc Chem Res; 2011 Dec; 44(12):1280-91. PubMed ID: 21615079
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE).
    Merino EJ; Wilkinson KA; Coughlan JL; Weeks KM
    J Am Chem Soc; 2005 Mar; 127(12):4223-31. PubMed ID: 15783204
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Chemical Probing of RNA Structure In Vivo Using SHAPE-MaP and DMS-MaP.
    Saha K; Ghosh G
    Methods Mol Biol; 2023; 2666():81-93. PubMed ID: 37166658
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution.
    Wilkinson KA; Merino EJ; Weeks KM
    Nat Protoc; 2006; 1(3):1610-6. PubMed ID: 17406453
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution.
    Mortimer SA; Weeks KM
    Nat Protoc; 2009; 4(10):1413-21. PubMed ID: 19745823
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Determination of RNA Structure with In Vitro SHAPE Experiments.
    Baes R; Charlier D; Peeters E
    Methods Mol Biol; 2022; 2516():259-290. PubMed ID: 35922631
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SHAPE Profiling to Probe Group II Intron Conformational Dynamics During Splicing.
    Wiryaman T; Toor N
    Methods Mol Biol; 2021; 2167():171-182. PubMed ID: 32712920
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
    Watters KE; Yu AM; Strobel EJ; Settle AH; Lucks JB
    Methods; 2016 Jul; 103():34-48. PubMed ID: 27064082
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease.
    Steen KA; Malhotra A; Weeks KM
    J Am Chem Soc; 2010 Jul; 132(29):9940-3. PubMed ID: 20597503
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RNA structural analysis by evolving SHAPE chemistry.
    Spitale RC; Flynn RA; Torre EA; Kool ET; Chang HY
    Wiley Interdiscip Rev RNA; 2014; 5(6):867-81. PubMed ID: 25132067
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Carbodiimide reagents for the chemical probing of RNA structure in cells.
    Wang PY; Sexton AN; Culligan WJ; Simon MD
    RNA; 2019 Jan; 25(1):135-146. PubMed ID: 30389828
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA.
    Wilkinson KA; Vasa SM; Deigan KE; Mortimer SA; Giddings MC; Weeks KM
    RNA; 2009 Jul; 15(7):1314-21. PubMed ID: 19458034
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The mechanisms of RNA SHAPE chemistry.
    McGinnis JL; Dunkle JA; Cate JH; Weeks KM
    J Am Chem Soc; 2012 Apr; 134(15):6617-24. PubMed ID: 22475022
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The interplay between molecular flexibility and RNA chemical probing reactivities analyzed at the nucleotide level via an extensive molecular dynamics study.
    Frezza E; Courban A; Allouche D; Sargueil B; Pasquali S
    Methods; 2019 Jun; 162-163():108-127. PubMed ID: 31145972
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Quantitative Understanding of SHAPE Mechanism from RNA Structure and Dynamics Analysis.
    Hurst T; Xu X; Zhao P; Chen SJ
    J Phys Chem B; 2018 May; 122(18):4771-4783. PubMed ID: 29659274
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.