BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

230 related articles for article (PubMed ID: 37184398)

  • 1. Reference-Free Plant Disease Detection Using Machine Learning and Long-Read Metagenomic Sequencing.
    Johnson MA; Vinatzer BA; Li S
    Appl Environ Microbiol; 2023 Jun; 89(6):e0026023. PubMed ID: 37184398
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Massive metagenomic data analysis using abundance-based machine learning.
    Harris ZN; Dhungel E; Mosior M; Ahn TH
    Biol Direct; 2019 Aug; 14(1):12. PubMed ID: 31370905
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
    Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
    BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
    [TBL] [Abstract][Full Text] [Related]  

  • 5. UltraSEQ, a Universal Bioinformatic Platform for Information-Based Clinical Metagenomics and Beyond.
    Gemler BT; Mukherjee C; Howland C; Fullerton PA; Spurbeck RR; Catlin LA; Smith A; Minard-Smith AT; Bartling C
    Microbiol Spectr; 2023 Jun; 11(3):e0416022. PubMed ID: 37039637
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Deep learning models for bacteria taxonomic classification of metagenomic data.
    Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
    BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Metagenomic sequencing for detection and identification of the boxwood blight pathogen Calonectria pseudonaviculata.
    Yang S; Johnson MA; Hansen MA; Bush E; Li S; Vinatzer BA
    Sci Rep; 2022 Jan; 12(1):1399. PubMed ID: 35082361
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
    Portik DM; Brown CT; Pierce-Ward NT
    BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Investigation of machine learning algorithms for taxonomic classification of marine metagenomes.
    Park H; Lim SJ; Cosme J; O'Connell K; Sandeep J; Gayanilo F; Cutter GR; Montes E; Nitikitpaiboon C; Fisher S; Moustahfid H; Thompson LR
    Microbiol Spectr; 2023 Sep; 11(5):e0523722. PubMed ID: 37695074
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Generation and application of pseudo-long reads for metagenome assembly.
    Sim M; Lee J; Wy S; Park N; Lee D; Kwon D; Kim J
    Gigascience; 2022 May; 11():. PubMed ID: 35579554
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Snipe: highly sensitive pathogen detection from metagenomic sequencing data.
    Huang L; Hong B; Yang W; Wang L; Yu R
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33822895
    [TBL] [Abstract][Full Text] [Related]  

  • 12. cgMSI: pathogen detection within species from nanopore metagenomic sequencing data.
    Zhu X; Zhao L; Huang L; Yang W; Wang L; Yu R
    BMC Bioinformatics; 2023 Oct; 24(1):387. PubMed ID: 37821827
    [TBL] [Abstract][Full Text] [Related]  

  • 13. IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring.
    Kalantar KL; Carvalho T; de Bourcy CFA; Dimitrov B; Dingle G; Egger R; Han J; Holmes OB; Juan YF; King R; Kislyuk A; Lin MF; Mariano M; Morse T; Reynoso LV; Cruz DR; Sheu J; Tang J; Wang J; Zhang MA; Zhong E; Ahyong V; Lay S; Chea S; Bohl JA; Manning JE; Tato CM; DeRisi JL
    Gigascience; 2020 Oct; 9(10):. PubMed ID: 33057676
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Large-scale machine learning for metagenomics sequence classification.
    Vervier K; Mahé P; Tournoud M; Veyrieras JB; Vert JP
    Bioinformatics; 2016 Apr; 32(7):1023-32. PubMed ID: 26589281
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing.
    Rawat A; Engelthaler DM; Driebe EM; Keim P; Foster JT
    PLoS One; 2014; 9(11):e110915. PubMed ID: 25365329
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Alignment-free supervised classification of metagenomes by recursive SVM.
    Cui H; Zhang X
    BMC Genomics; 2013 Sep; 14():641. PubMed ID: 24053649
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data.
    Chen JC; Tyler AD
    Biol Direct; 2020 Dec; 15(1):29. PubMed ID: 33302990
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Sketching and sampling approaches for fast and accurate long read classification.
    Das A; Schatz MC
    BMC Bioinformatics; 2022 Oct; 23(1):452. PubMed ID: 36316646
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
    Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS
    BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing.
    Pan W; Chen B; Xu Y
    Interdiscip Sci; 2015 Dec; 7(4):405-13. PubMed ID: 26293485
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.