BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

163 related articles for article (PubMed ID: 37197990)

  • 1. Improving quartet graph construction for scalable and accurate species tree estimation from gene trees.
    Han Y; Molloy EK
    Genome Res; 2023 Jul; 33(7):1042-1052. PubMed ID: 37197990
    [TBL] [Abstract][Full Text] [Related]  

  • 2. wQFM: highly accurate genome-scale species tree estimation from weighted quartets.
    Mahbub M; Wahab Z; Reaz R; Rahman MS; Bayzid MS
    Bioinformatics; 2021 Nov; 37(21):3734-3743. PubMed ID: 34086858
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees.
    Zhang C; Mirarab S
    Mol Biol Evol; 2022 Dec; 39(12):. PubMed ID: 36201617
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data.
    Mahbub S; Sawmya S; Saha A; Reaz R; Rahman MS; Bayzid MS
    J Comput Biol; 2022 Nov; 29(11):1156-1172. PubMed ID: 36048555
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Species Tree Estimation from Gene Trees by Minimizing Deep Coalescence and Maximizing Quartet Consistency: A Comparative Study and the Presence of Pseudo Species Tree Terraces.
    Farah IT; Islam M; Zinat KT; Rahman AH; Bayzid S
    Syst Biol; 2021 Oct; 70(6):1213-1231. PubMed ID: 33844023
    [TBL] [Abstract][Full Text] [Related]  

  • 6. QuCo: quartet-based co-estimation of species trees and gene trees.
    Rabiee M; Mirarab S
    Bioinformatics; 2022 Jun; 38(Suppl 1):i413-i421. PubMed ID: 35758818
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Quartets MaxCut: a divide and conquer quartets algorithm.
    Snir S; Rao S
    IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(4):704-18. PubMed ID: 21030737
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search space.
    Vachaspati P; Warnow T
    Mol Phylogenet Evol; 2018 Jul; 124():122-136. PubMed ID: 29530498
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Using max cut to enhance rooted trees consistency.
    Snir S; Rao S
    IEEE/ACM Trans Comput Biol Bioinform; 2006; 3(4):323-33. PubMed ID: 17085842
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A comparative study of SVDquartets and other coalescent-based species tree estimation methods.
    Chou J; Gupta A; Yaduvanshi S; Davidson R; Nute M; Mirarab S; Warnow T
    BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S2. PubMed ID: 26449249
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees.
    Zhang C; Rabiee M; Sayyari E; Mirarab S
    BMC Bioinformatics; 2018 May; 19(Suppl 6):153. PubMed ID: 29745866
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Theoretical and Practical Considerations when using Retroelement Insertions to Estimate Species Trees in the Anomaly Zone.
    Molloy EK; Gatesy J; Springer MS
    Syst Biol; 2022 Apr; 71(3):721-740. PubMed ID: 34677617
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Accurate phylogenetic tree reconstruction from quartets: a heuristic approach.
    Reaz R; Bayzid MS; Rahman MS
    PLoS One; 2014; 9(8):e104008. PubMed ID: 25117474
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Weighted quartets phylogenetics.
    Avni E; Cohen R; Snir S
    Syst Biol; 2015 Mar; 64(2):233-42. PubMed ID: 25414175
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Inferring Metric Trees from Weighted Quartets via an Intertaxon Distance.
    Yourdkhani S; Rhodes JA
    Bull Math Biol; 2020 Jul; 82(7):97. PubMed ID: 32676801
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer.
    Davidson R; Vachaspati P; Mirarab S; Warnow T
    BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S1. PubMed ID: 26450506
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The Performance of Two Supertree Schemes Compared Using Synthetic and Real Data Quartet Input.
    Avni E; Yona Z; Cohen R; Snir S
    J Mol Evol; 2018 Feb; 86(2):150-165. PubMed ID: 29460038
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Consensus properties for the deep coalescence problem and their application for scalable tree search.
    Lin HT; Burleigh JG; Eulenstein O
    BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S12. PubMed ID: 22759417
    [TBL] [Abstract][Full Text] [Related]  

  • 19. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
    Molloy EK; Warnow T
    Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies.
    Sayyari E; Mirarab S
    Mol Biol Evol; 2016 Jul; 33(7):1654-68. PubMed ID: 27189547
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.