BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

117 related articles for article (PubMed ID: 37208161)

  • 1. RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.
    Ramos M; Morgan M; Geistlinger L; Carey VJ; Waldron L
    Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37208161
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Software for the Integration of Multiomics Experiments in Bioconductor.
    Ramos M; Schiffer L; Re A; Azhar R; Basunia A; Rodriguez C; Chan T; Chapman P; Davis SR; Gomez-Cabrero D; Culhane AC; Haibe-Kains B; Hansen KD; Kodali H; Louis MS; Mer AS; Riester M; Morgan M; Carey V; Waldron L
    Cancer Res; 2017 Nov; 77(21):e39-e42. PubMed ID: 29092936
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Multiomic Integration of Public Oncology Databases in Bioconductor.
    Ramos M; Geistlinger L; Oh S; Schiffer L; Azhar R; Kodali H; de Bruijn I; Gao J; Carey VJ; Morgan M; Waldron L
    JCO Clin Cancer Inform; 2020 Oct; 4():958-971. PubMed ID: 33119407
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Katdetectr: an R/bioconductor package utilizing unsupervised changepoint analysis for robust kataegis detection.
    Hazelaar DM; van Riet J; Hoogstrate Y; van de Werken HJG
    Gigascience; 2022 Dec; 12():. PubMed ID: 37848617
    [TBL] [Abstract][Full Text] [Related]  

  • 5. h5vc: scalable nucleotide tallies with HDF5.
    Pyl PT; Gehring J; Fischer B; Huber W
    Bioinformatics; 2014 May; 30(10):1464-6. PubMed ID: 24451629
    [TBL] [Abstract][Full Text] [Related]  

  • 6. caOmicsV: an R package for visualizing multidimensional cancer genomic data.
    Zhang H; Meltzer PS; Davis SR
    BMC Bioinformatics; 2016 Mar; 17():141. PubMed ID: 27005934
    [TBL] [Abstract][Full Text] [Related]  

  • 7. cbpManager: a web application to streamline the integration of clinical and genomic data in cBioPortal to support the Molecular Tumor Board.
    Ustjanzew A; Desuki A; Ritzel C; Dolezilek AC; Wagner DC; Christoph J; Unberath P; Kindler T; Faber J; Marini F; Panholzer T; Paret C
    BMC Med Inform Decis Mak; 2021 Dec; 21(1):358. PubMed ID: 34930224
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.
    González-Beltrán A; Neumann S; Maguire E; Sansone SA; Rocca-Serra P
    BMC Bioinformatics; 2014; 15 Suppl 1(Suppl 1):S11. PubMed ID: 24564732
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Maftools: efficient and comprehensive analysis of somatic variants in cancer.
    Mayakonda A; Lin DC; Assenov Y; Plass C; Koeffler HP
    Genome Res; 2018 Nov; 28(11):1747-1756. PubMed ID: 30341162
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ExperimentSubset: an R package to manage subsets of Bioconductor Experiment objects.
    Sarfraz I; Asif M; Campbell JD
    Bioinformatics; 2021 Sep; 37(18):3058-3060. PubMed ID: 33715007
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ReUseData: an R/Bioconductor tool for reusable and reproducible genomic data management.
    Liu Q; Hu Q; Liu S; Hutson A; Morgan M
    BMC Bioinformatics; 2024 Jan; 25(1):8. PubMed ID: 38172657
    [TBL] [Abstract][Full Text] [Related]  

  • 12. VegaMC: a R/bioconductor package for fast downstream analysis of large array comparative genomic hybridization datasets.
    Morganella S; Ceccarelli M
    Bioinformatics; 2012 Oct; 28(19):2512-4. PubMed ID: 22815357
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genetic association testing using the GENESIS R/Bioconductor package.
    Gogarten SM; Sofer T; Chen H; Yu C; Brody JA; Thornton TA; Rice KM; Conomos MP
    Bioinformatics; 2019 Dec; 35(24):5346-5348. PubMed ID: 31329242
    [TBL] [Abstract][Full Text] [Related]  

  • 14. StructuralVariantAnnotation: a R/Bioconductor foundation for a caller-agnostic structural variant software ecosystem.
    Cameron DL; Dong R; Papenfuss AT
    Bioinformatics; 2022 Mar; 38(7):2046-2048. PubMed ID: 35134827
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Epiviz Web Components: reusable and extensible component library to visualize functional genomic datasets.
    Kancherla J; Zhang A; Gottfried B; Bravo HC
    F1000Res; 2018; 7():1096. PubMed ID: 30135734
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GenomicDistributions: fast analysis of genomic intervals with Bioconductor.
    Kupkova K; Mosquera JV; Smith JP; Stolarczyk M; Danehy TL; Lawson JT; Xue B; Stubbs JT; LeRoy N; Sheffield NC
    BMC Genomics; 2022 Apr; 23(1):299. PubMed ID: 35413804
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Exploring the Genomic Landscape of Cancer Patient Cohorts with GenVisR.
    Skidmore ZL; Campbell KM; Cotto KC; Griffith M; Griffith OL
    Curr Protoc; 2021 Sep; 1(9):e252. PubMed ID: 34506690
    [TBL] [Abstract][Full Text] [Related]  

  • 18. VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.
    Obenchain V; Lawrence M; Carey V; Gogarten S; Shannon P; Morgan M
    Bioinformatics; 2014 Jul; 30(14):2076-8. PubMed ID: 24681907
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
    Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
    Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SomatiCA: identifying, characterizing and quantifying somatic copy number aberrations from cancer genome sequencing data.
    Chen M; Gunel M; Zhao H
    PLoS One; 2013; 8(11):e78143. PubMed ID: 24265680
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.