436 related articles for article (PubMed ID: 37211599)
21. Investigating chromatin accessibility during development and differentiation by ATAC-sequencing to guide the identification of cis-regulatory elements.
Louise Smith E; Mok GF; Münsterberg A
Biochem Soc Trans; 2022 Jun; 50(3):1167-1177. PubMed ID: 35604124
[TBL] [Abstract][Full Text] [Related]
22. Dissecting the Epigenome Driving Drug Resistance by ATAC-Seq.
de Nicola F; Corleone G; Goeman F
Methods Mol Biol; 2022; 2535():171-185. PubMed ID: 35867231
[TBL] [Abstract][Full Text] [Related]
23. Genome-Wide Mapping of Active Regulatory Elements Using ATAC-seq.
Marinov GK; Shipony Z; Kundaje A; Greenleaf WJ
Methods Mol Biol; 2023; 2611():3-19. PubMed ID: 36807060
[TBL] [Abstract][Full Text] [Related]
24. Mapping Chromatin Accessibility in Human Naïve Pluripotent Stem Cells Using ATAC-Seq.
Cinkornpumin JK; Hossain I; Pastor WA
Methods Mol Biol; 2022; 2416():201-211. PubMed ID: 34870838
[TBL] [Abstract][Full Text] [Related]
25. Optimized assay for transposase-accessible chromatin by sequencing (ATAC-seq) library preparation from adult Drosophila melanogaster neurons.
Merrill CB; Pabon MA; Montgomery AB; Rodan AR; Rothenfluh A
Sci Rep; 2022 Apr; 12(1):6043. PubMed ID: 35411004
[TBL] [Abstract][Full Text] [Related]
26. AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis.
Liu S; Li D; Lyu C; Gontarz PM; Miao B; Madden PAF; Wang T; Zhang B
Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):641-651. PubMed ID: 34273560
[TBL] [Abstract][Full Text] [Related]
27. Exploring Chromatin Accessibility in Mouse Epiblast Stem Cells with ATAC-Seq.
Salehin N; Santucci N; Osteil P; Tam PPL
Methods Mol Biol; 2022; 2490():93-100. PubMed ID: 35486242
[TBL] [Abstract][Full Text] [Related]
28. Chromatin accessibility profiling by ATAC-seq.
Grandi FC; Modi H; Kampman L; Corces MR
Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
[TBL] [Abstract][Full Text] [Related]
29. Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes.
Ackermann AM; Wang Z; Schug J; Naji A; Kaestner KH
Mol Metab; 2016 Mar; 5(3):233-244. PubMed ID: 26977395
[TBL] [Abstract][Full Text] [Related]
30. Visualization of the landscape of the read alignment shape of ATAC-seq data using Hellinger distance metric.
Cheng JH; Zheng C; Yamada R; Okada D
Genes Cells; 2024 Jan; 29(1):5-16. PubMed ID: 37989133
[TBL] [Abstract][Full Text] [Related]
31. scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing.
Zhang X; Marand AP; Yan H; Schmitz RJ
Genome Biol; 2024 Apr; 25(1):90. PubMed ID: 38589969
[TBL] [Abstract][Full Text] [Related]
32. maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
Cazares TA; Rizvi FW; Iyer B; Chen X; Kotliar M; Bejjani AT; Wayman JA; Donmez O; Wronowski B; Parameswaran S; Kottyan LC; Barski A; Weirauch MT; Prasath VBS; Miraldi ER
PLoS Comput Biol; 2023 Jan; 19(1):e1010863. PubMed ID: 36719906
[TBL] [Abstract][Full Text] [Related]
33. Chromatin Accessibility Profiling and Data Analysis Using ATAC-seq in
Reeves GA; Singh PP; Brunet A
Cold Spring Harb Protoc; 2024 Mar; 2024(3):107747. PubMed ID: 37100469
[TBL] [Abstract][Full Text] [Related]
34. Improved quality metrics for association and reproducibility in chromatin accessibility data using mutual information.
Roth C; Venu V; Job V; Lubbers N; Sanbonmatsu KY; Steadman CR; Starkenburg SR
BMC Bioinformatics; 2023 Nov; 24(1):441. PubMed ID: 37990143
[TBL] [Abstract][Full Text] [Related]
35. Protocol for bulk and single-nuclei chromatin accessibility quantification in mouse liver tissue.
Korenfeld N; Toft NI; Dam TV; Charni-Natan M; Grøntved L; Goldstein I
STAR Protoc; 2023 Sep; 4(3):102462. PubMed ID: 37590150
[TBL] [Abstract][Full Text] [Related]
36. Cell type-specific chromatin accessibility analysis in the mouse and human brain.
Rocks D; Jaric I; Tesfa L; Greally JM; Suzuki M; Kundakovic M
Epigenetics; 2022; 17(2):202-219. PubMed ID: 33775205
[TBL] [Abstract][Full Text] [Related]
37. An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies.
Bera BS; Thompson TV; Sosa E; Nomaru H; Reynolds D; Dubin RA; Maqbool SB; Zheng D; Morrow BE; Greally JM; Suzuki M
Epigenetics Chromatin; 2023 Apr; 16(1):14. PubMed ID: 37118773
[TBL] [Abstract][Full Text] [Related]
38. An ATAC-seq atlas of chromatin accessibility in mouse tissues.
Liu C; Wang M; Wei X; Wu L; Xu J; Dai X; Xia J; Cheng M; Yuan Y; Zhang P; Li J; Feng T; Chen A; Zhang W; Chen F; Shang Z; Zhang X; Peters BA; Liu L
Sci Data; 2019 May; 6(1):65. PubMed ID: 31110271
[TBL] [Abstract][Full Text] [Related]
39. Harnessing changes in open chromatin determined by ATAC-seq to generate insulin-responsive reporter constructs.
Merrill CB; Montgomery AB; Pabon MA; Shabalin AA; Rodan AR; Rothenfluh A
BMC Genomics; 2022 May; 23(1):399. PubMed ID: 35614386
[TBL] [Abstract][Full Text] [Related]
40. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
