These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. Tellurium: An extensible python-based modeling environment for systems and synthetic biology. Choi K; Medley JK; König M; Stocking K; Smith L; Gu S; Sauro HM Biosystems; 2018 Sep; 171():74-79. PubMed ID: 30053414 [TBL] [Abstract][Full Text] [Related]
6. Adapting a Plant Tissue Model to Animal Development: Introducing Cell Sliding into VirtualLeaf. Wolff HB; Davidson LA; Merks RMH Bull Math Biol; 2019 Aug; 81(8):3322-3341. PubMed ID: 30927191 [TBL] [Abstract][Full Text] [Related]
7. The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks. Naldi A; Hernandez C; Levy N; Stoll G; Monteiro PT; Chaouiya C; Helikar T; Zinovyev A; Calzone L; Cohen-Boulakia S; Thieffry D; Paulevé L Front Physiol; 2018; 9():680. PubMed ID: 29971009 [TBL] [Abstract][Full Text] [Related]
8. Improving the usability of open health service delivery simulation models using Python and web apps. Monks T; Harper A NIHR Open Res; 2023; 3():48. PubMed ID: 37881450 [TBL] [Abstract][Full Text] [Related]
9. CBMOS: a GPU-enabled Python framework for the numerical study of center-based models. Mathias S; Coulier A; Hellander A BMC Bioinformatics; 2022 Jan; 23(1):55. PubMed ID: 35100968 [TBL] [Abstract][Full Text] [Related]
18. PhysiCell Studio: a graphical tool to make agent-based modeling more accessible. Heiland R; Bergman D; Lyons B; Waldow G; Cass J; Lima da Rocha H; Ruscone M; Noël V; Macklin P GigaByte; 2024; 2024():gigabyte128. PubMed ID: 38948511 [TBL] [Abstract][Full Text] [Related]
19. Artistoo, a library to build, share, and explore simulations of cells and tissues in the web browser. Wortel IM; Textor J Elife; 2021 Apr; 10():. PubMed ID: 33835022 [TBL] [Abstract][Full Text] [Related]
20. BlenderPhotonics: an integrated open-source software environment for three-dimensional meshing and photon simulations in complex tissues. Zhang Y; Fang Q J Biomed Opt; 2022 Apr; 27(8):. PubMed ID: 35429155 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]