These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 37217253)

  • 1. Entropy predicts sensitivity of pseudorandom seeds.
    Maier BD; Sahlin K
    Genome Res; 2023 Jul; 33(7):1162-1174. PubMed ID: 37217253
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Effective sequence similarity detection with strobemers.
    Sahlin K
    Genome Res; 2021 Nov; 31(11):2080-2094. PubMed ID: 34667119
    [No Abstract]   [Full Text] [Related]  

  • 3. Strobealign: flexible seed size enables ultra-fast and accurate read alignment.
    Sahlin K
    Genome Biol; 2022 Dec; 23(1):260. PubMed ID: 36522758
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Indel seeds for homology search.
    Mak D; Gelfand Y; Benson G
    Bioinformatics; 2006 Jul; 22(14):e341-9. PubMed ID: 16873491
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Effects of spaced k-mers on alignment-free genotyping.
    Häntze H; Horton P
    Bioinformatics; 2023 Jun; 39(39 Suppl 1):i213-i221. PubMed ID: 37387138
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PerFSeeB: designing long high-weight single spaced seeds for full sensitivity alignment with a given number of mismatches.
    Titarenko V; Titarenko S
    BMC Bioinformatics; 2023 Oct; 24(1):396. PubMed ID: 37875804
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficient Seeding for Error-Prone Sequences with SubseqHash2.
    Li X; Chen K; Shao M
    bioRxiv; 2024 Jun; ():. PubMed ID: 38895288
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Designing multiple simultaneous seeds for DNA similarity search.
    Sun Y; Buhler J
    J Comput Biol; 2005; 12(6):847-61. PubMed ID: 16108721
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote.
    Liao Y; Smyth GK; Shi W
    Nucleic Acids Res; 2013 May; 41(10):e108. PubMed ID: 23558742
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Good spaced seeds for homology search.
    Choi KP; Zeng F; Zhang L
    Bioinformatics; 2004 May; 20(7):1053-9. PubMed ID: 14764573
    [TBL] [Abstract][Full Text] [Related]  

  • 11. GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.
    Kim JS; Senol Cali D; Xin H; Lee D; Ghose S; Alser M; Hassan H; Ergin O; Alkan C; Mutlu O
    BMC Genomics; 2018 May; 19(Suppl 2):89. PubMed ID: 29764378
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FSH: fast spaced seed hashing exploiting adjacent hashes.
    Girotto S; Comin M; Pizzi C
    Algorithms Mol Biol; 2018; 13():8. PubMed ID: 29588651
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Choosing the best heuristic for seeded alignment of DNA sequences.
    Sun Y; Buhler J
    BMC Bioinformatics; 2006 Mar; 7():133. PubMed ID: 16533404
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters.
    Chu J; Mohamadi H; Erhan E; Tse J; Chiu R; Yeo S; Birol I
    Proc Natl Acad Sci U S A; 2020 Jul; 117(29):16961-16968. PubMed ID: 32641514
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SRPRISM (Single Read Paired Read Indel Substitution Minimizer): an efficient aligner for assemblies with explicit guarantees.
    Morgulis A; Agarwala R
    Gigascience; 2020 Apr; 9(4):. PubMed ID: 32315028
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SEME: a fast mapper of Illumina sequencing reads with statistical evaluation.
    Chen S; Wang A; Li LM
    J Comput Biol; 2013 Nov; 20(11):847-60. PubMed ID: 24195707
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Efficient computation of spaced seed hashing with block indexing.
    Girotto S; Comin M; Pizzi C
    BMC Bioinformatics; 2018 Nov; 19(Suppl 15):441. PubMed ID: 30497364
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Dindel: accurate indel calls from short-read data.
    Albers CA; Lunter G; MacArthur DG; McVean G; Ouwehand WH; Durbin R
    Genome Res; 2011 Jun; 21(6):961-73. PubMed ID: 20980555
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An empirical study of choosing efficient discriminative seeds for oligonucleotide design.
    Chung WH; Park SB
    BMC Genomics; 2009 Dec; 10 Suppl 3(Suppl 3):S3. PubMed ID: 19958494
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A random-permutations-based approach to fast read alignment.
    Lederman R
    BMC Bioinformatics; 2013; 14 Suppl 5(Suppl 5):S8. PubMed ID: 23734846
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.