246 related articles for article (PubMed ID: 37217501)
1. A method for restoring signals and revealing individual macromolecule states in cryo-ET, REST.
Zhang H; Li Y; Liu Y; Li D; Wang L; Song K; Bao K; Zhu P
Nat Commun; 2023 May; 14(1):2937. PubMed ID: 37217501
[TBL] [Abstract][Full Text] [Related]
2. Simulating cryo electron tomograms of crowded cell cytoplasm for assessment of automated particle picking.
Pei L; Xu M; Frazier Z; Alber F
BMC Bioinformatics; 2016 Oct; 17(1):405. PubMed ID: 27716029
[TBL] [Abstract][Full Text] [Related]
3. VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms.
Hao Y; Wan X; Yan R; Liu Z; Li J; Zhang S; Cui X; Zhang F
Comput Methods Programs Biomed; 2022 Jun; 221():106871. PubMed ID: 35584579
[TBL] [Abstract][Full Text] [Related]
4. Current data processing strategies for cryo-electron tomography and subtomogram averaging.
Pyle E; Zanetti G
Biochem J; 2021 May; 478(10):1827-1845. PubMed ID: 34003255
[TBL] [Abstract][Full Text] [Related]
5. Multishot tomography for high-resolution in situ subtomogram averaging.
Khavnekar S; Wan W; Majumder P; Wietrzynski W; Erdmann PS; Plitzko JM
J Struct Biol; 2023 Mar; 215(1):107911. PubMed ID: 36343843
[TBL] [Abstract][Full Text] [Related]
6. A unified framework for packing deformable and non-deformable subcellular structures in crowded cryo-electron tomogram simulation.
Liu S; Ban X; Zeng X; Zhao F; Gao Y; Wu W; Zhang H; Chen F; Hall T; Gao X; Xu M
BMC Bioinformatics; 2020 Sep; 21(1):399. PubMed ID: 32907544
[TBL] [Abstract][Full Text] [Related]
7. Compressed sensing for electron cryotomography and high-resolution subtomogram averaging of biological specimens.
Böhning J; Bharat TAM; Collins SM
Structure; 2022 Mar; 30(3):408-417.e4. PubMed ID: 35051366
[TBL] [Abstract][Full Text] [Related]
8. MBIR: A cryo-ET 3D reconstruction method that effectively minimizes missing wedge artifacts and restores missing information.
Yan R; Venkatakrishnan SV; Liu J; Bouman CA; Jiang W
J Struct Biol; 2019 May; 206(2):183-192. PubMed ID: 30872095
[TBL] [Abstract][Full Text] [Related]
9. Strategies for picking membrane-associated particles within subtomogram averaging workflows.
Pyle E; Hutchings J; Zanetti G
Faraday Discuss; 2022 Nov; 240(0):101-113. PubMed ID: 35924570
[TBL] [Abstract][Full Text] [Related]
10. Cryo-Electron Tomography and Subtomogram Averaging.
Wan W; Briggs JA
Methods Enzymol; 2016; 579():329-67. PubMed ID: 27572733
[TBL] [Abstract][Full Text] [Related]
11. Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms.
Castaño-Díez D; Kudryashev M; Stahlberg H
J Struct Biol; 2017 Feb; 197(2):135-144. PubMed ID: 27288866
[TBL] [Abstract][Full Text] [Related]
12. Streamlined structure determination by cryo-electron tomography and subtomogram averaging using TomoBEAR.
Balyschew N; Yushkevich A; Mikirtumov V; Sanchez RM; Sprink T; Kudryashev M
Nat Commun; 2023 Oct; 14(1):6543. PubMed ID: 37848413
[TBL] [Abstract][Full Text] [Related]
13. Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å.
Turoňová B; Schur FKM; Wan W; Briggs JAG
J Struct Biol; 2017 Sep; 199(3):187-195. PubMed ID: 28743638
[TBL] [Abstract][Full Text] [Related]
14. TomoFlow: Analysis of Continuous Conformational Variability of Macromolecules in Cryogenic Subtomograms based on 3D Dense Optical Flow.
Harastani M; Eltsov M; Leforestier A; Jonic S
J Mol Biol; 2022 Jan; 434(2):167381. PubMed ID: 34848215
[TBL] [Abstract][Full Text] [Related]
15. Structural analysis of pleomorphic and asymmetric viruses using cryo-electron tomography and subtomogram averaging.
Obr M; Schur FKM
Adv Virus Res; 2019; 105():117-159. PubMed ID: 31522703
[TBL] [Abstract][Full Text] [Related]
16. High-throughput cryo-ET structural pattern mining by unsupervised deep iterative subtomogram clustering.
Zeng X; Kahng A; Xue L; Mahamid J; Chang YW; Xu M
Proc Natl Acad Sci U S A; 2023 Apr; 120(15):e2213149120. PubMed ID: 37027429
[TBL] [Abstract][Full Text] [Related]
17. Combining high throughput and high quality for cryo-electron microscopy data collection.
Weis F; Hagen WJH
Acta Crystallogr D Struct Biol; 2020 Aug; 76(Pt 8):724-728. PubMed ID: 32744254
[TBL] [Abstract][Full Text] [Related]
18. Computational methods for
Zhao C; Lu D; Zhao Q; Ren C; Zhang H; Zhai J; Gou J; Zhu S; Zhang Y; Gong X
Front Cell Infect Microbiol; 2023; 13():1135013. PubMed ID: 37868346
[TBL] [Abstract][Full Text] [Related]
19. TomoTwin: generalized 3D localization of macromolecules in cryo-electron tomograms with structural data mining.
Rice G; Wagner T; Stabrin M; Sitsel O; Prumbaum D; Raunser S
Nat Methods; 2023 Jun; 20(6):871-880. PubMed ID: 37188953
[TBL] [Abstract][Full Text] [Related]
20. PyTom: a python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis.
Hrabe T; Chen Y; Pfeffer S; Cuellar LK; Mangold AV; Förster F
J Struct Biol; 2012 May; 178(2):177-88. PubMed ID: 22193517
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]