These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

137 related articles for article (PubMed ID: 37224332)

  • 1. GRAPE: genomic relatedness detection pipeline.
    Medvedev A; Lebedev M; Ponomarev A; Kosaretskiy M; Osipenko D; Tischenko A; Kosaretskiy E; Wang H; Kolobkov D; Chamberlain-Evans V; Vakhitov R; Nikonorov P
    F1000Res; 2022; 11():589. PubMed ID: 37224332
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PSReliP: an integrated pipeline for analysis and visualization of population structure and relatedness based on genome-wide genetic variant data.
    Solovieva E; Sakai H
    BMC Bioinformatics; 2023 Apr; 24(1):135. PubMed ID: 37020193
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molgenis-impute: imputation pipeline in a box.
    Kanterakis A; Deelen P; van Dijk F; Byelas H; Dijkstra M; Swertz MA
    BMC Res Notes; 2015 Aug; 8():359. PubMed ID: 26286716
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ILIAD: a suite of automated Snakemake workflows for processing genomic data for downstream applications.
    Herrick N; Walsh S
    BMC Bioinformatics; 2023 Nov; 24(1):424. PubMed ID: 37940870
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Gimpute: an efficient genetic data imputation pipeline.
    Chen J; Lippold D; Frank J; Rayner W; Meyer-Lindenberg A; Schwarz E
    Bioinformatics; 2019 Apr; 35(8):1433-1435. PubMed ID: 30239591
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Privacy-aware estimation of relatedness in admixed populations.
    Wang S; Kim M; Li W; Jiang X; Chen H; Harmanci A
    Brief Bioinform; 2022 Nov; 23(6):. PubMed ID: 36384083
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RICOPILI: Rapid Imputation for COnsortias PIpeLIne.
    Lam M; Awasthi S; Watson HJ; Goldstein J; Panagiotaropoulou G; Trubetskoy V; Karlsson R; Frei O; Fan CC; De Witte W; Mota NR; Mullins N; Brügger K; Lee SH; Wray NR; Skarabis N; Huang H; Neale B; Daly MJ; Mattheisen M; Walters R; Ripke S
    Bioinformatics; 2020 Feb; 36(3):930-933. PubMed ID: 31393554
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Fast and Accurate Shared Segment Detection and Relatedness Estimation in Un-phased Genetic Data via TRUFFLE.
    Dimitromanolakis A; Paterson AD; Sun L
    Am J Hum Genet; 2019 Jul; 105(1):78-88. PubMed ID: 31178127
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species.
    Kutschera VE; Kierczak M; van der Valk T; von Seth J; Dussex N; Lord E; Dehasque M; Stanton DWG; Khoonsari PE; Nystedt B; Dalén L; Díez-Del-Molino D
    BMC Bioinformatics; 2022 Jun; 23(1):228. PubMed ID: 35698034
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MosaiCatcher v2: a single-cell structural variations detection and analysis reference framework based on Strand-seq.
    Weber T; Cosenza MR; Korbel J
    Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37851409
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evaluating the utility of identity-by-descent segment numbers for relatedness inference via information theory and classification.
    Smith J; Qiao Y; Williams AL
    G3 (Bethesda); 2022 May; 12(6):. PubMed ID: 35348675
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Inference of relationships in population data using identity-by-descent and identity-by-state.
    Stevens EL; Heckenberg G; Roberson ED; Baugher JD; Downey TJ; Pevsner J
    PLoS Genet; 2011 Sep; 7(9):e1002287. PubMed ID: 21966277
    [TBL] [Abstract][Full Text] [Related]  

  • 13. EagleImp: fast and accurate genome-wide phasing and imputation in a single tool.
    Wienbrandt L; Ellinghaus D
    Bioinformatics; 2022 Nov; 38(22):4999-5006. PubMed ID: 36130053
    [TBL] [Abstract][Full Text] [Related]  

  • 14. genipe: an automated genome-wide imputation pipeline with automatic reporting and statistical tools.
    Lemieux Perreault LP; Legault MA; Asselin G; Dubé MP
    Bioinformatics; 2016 Dec; 32(23):3661-3663. PubMed ID: 27497439
    [TBL] [Abstract][Full Text] [Related]  

  • 15. IBDkin: fast estimation of kinship coefficients from identity by descent segments.
    Zhou Y; Browning SR; Browning BL
    Bioinformatics; 2020 Aug; 36(16):4519-4520. PubMed ID: 32844204
    [TBL] [Abstract][Full Text] [Related]  

  • 16. snpQT: flexible, reproducible, and comprehensive quality control and imputation of genomic data.
    Vasilopoulou C; Wingfield B; Morris AP; Duddy W
    F1000Res; 2021; 10():567. PubMed ID: 34900230
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Using identity by descent estimation with dense genotype data to detect positive selection.
    Han L; Abney M
    Eur J Hum Genet; 2013 Feb; 21(2):205-11. PubMed ID: 22781100
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Fast and Robust Identity-by-Descent Inference with the Templated Positional Burrows-Wheeler Transform.
    Freyman WA; McManus KF; Shringarpure SS; Jewett EM; Bryc K; ; Auton A
    Mol Biol Evol; 2021 May; 38(5):2131-2151. PubMed ID: 33355662
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Pedigree reconstruction and distant pairwise relatedness estimation from genome sequence data: A demonstration in a population of rhesus macaques (Macaca mulatta).
    Petty LE; Phillippi-Falkenstein K; Kubisch HM; Raveendran M; Harris RA; Vallender EJ; Huff CD; Bohm RP; Rogers J; Below JE
    Mol Ecol Resour; 2021 May; 21(4):1333-1346. PubMed ID: 33386679
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Highly Accurate and Efficient Data-Driven Methods for Genotype Imputation.
    Choudhury O; Chakrabarty A; Emrich SJ
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1107-1116. PubMed ID: 28574365
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.