386 related articles for article (PubMed ID: 37224539)
1. STellaris: a web server for accurate spatial mapping of single cells based on spatial transcriptomics data.
Li X; Xiao C; Qi J; Xue W; Xu X; Mu Z; Zhang J; Li CY; Ding W
Nucleic Acids Res; 2023 Jul; 51(W1):W560-W568. PubMed ID: 37224539
[TBL] [Abstract][Full Text] [Related]
2. SPANN: annotating single-cell resolution spatial transcriptome data with scRNA-seq data.
Yuan M; Wan H; Wang Z; Guo Q; Deng M
Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38279647
[TBL] [Abstract][Full Text] [Related]
3. scMAGS: Marker gene selection from scRNA-seq data for spatial transcriptomics studies.
Baran Y; Doğan B
Comput Biol Med; 2023 Mar; 155():106634. PubMed ID: 36774895
[TBL] [Abstract][Full Text] [Related]
4. webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration.
Zhang Z; Cui F; Su W; Dou L; Xu A; Cao C; Zou Q
Bioinformatics; 2022 Jun; 38(13):3488-3489. PubMed ID: 35604082
[TBL] [Abstract][Full Text] [Related]
5. Computational solutions for spatial transcriptomics.
Kleino I; Frolovaitė P; Suomi T; Elo LL
Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664
[TBL] [Abstract][Full Text] [Related]
6. SD2: spatially resolved transcriptomics deconvolution through integration of dropout and spatial information.
Li H; Li H; Zhou J; Gao X
Bioinformatics; 2022 Oct; 38(21):4878-4884. PubMed ID: 36063455
[TBL] [Abstract][Full Text] [Related]
7. stPlus: a reference-based method for the accurate enhancement of spatial transcriptomics.
Shengquan C; Boheng Z; Xiaoyang C; Xuegong Z; Rui J
Bioinformatics; 2021 Jul; 37(Suppl_1):i299-i307. PubMed ID: 34252941
[TBL] [Abstract][Full Text] [Related]
8. Novel insights from spatial transcriptome analysis in solid tumors.
Du J; An ZJ; Huang ZF; Yang YC; Zhang MH; Fu XH; Shi WY; Hou J
Int J Biol Sci; 2023; 19(15):4778-4792. PubMed ID: 37781515
[TBL] [Abstract][Full Text] [Related]
9. Probabilistic cell/domain-type assignment of spatial transcriptomics data with SpatialAnno.
Shi X; Yang Y; Ma X; Zhou Y; Guo Z; Wang C; Liu J
Nucleic Acids Res; 2023 Dec; 51(22):e115. PubMed ID: 37941153
[TBL] [Abstract][Full Text] [Related]
10. Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information.
Liu Z; Sun D; Wang C
Genome Biol; 2022 Oct; 23(1):218. PubMed ID: 36253792
[TBL] [Abstract][Full Text] [Related]
11. SPASCER: spatial transcriptomics annotation at single-cell resolution.
Fan Z; Luo Y; Lu H; Wang T; Feng Y; Zhao W; Kim P; Zhou X
Nucleic Acids Res; 2023 Jan; 51(D1):D1138-D1149. PubMed ID: 36243975
[TBL] [Abstract][Full Text] [Related]
12. Deciphering the Spatial Modular Patterns of Tissues by Integrating Spatial and Single-Cell Transcriptomic Data.
Shan X; Chen J; Dong K; Zhou W; Zhang S
J Comput Biol; 2022 Jul; 29(7):650-663. PubMed ID: 35727094
[TBL] [Abstract][Full Text] [Related]
13. Single-cell and spatial transcriptomics approaches of cardiovascular development and disease.
Roth R; Kim S; Kim J; Rhee S
BMB Rep; 2020 Aug; 53(8):393-399. PubMed ID: 32684243
[TBL] [Abstract][Full Text] [Related]
14. Integrating spatial and single-cell transcriptomics data using deep generative models with SpatialScope.
Wan X; Xiao J; Tam SST; Cai M; Sugimura R; Wang Y; Wan X; Lin Z; Wu AR; Yang C
Nat Commun; 2023 Nov; 14(1):7848. PubMed ID: 38030617
[TBL] [Abstract][Full Text] [Related]
15. scPNMF: sparse gene encoding of single cells to facilitate gene selection for targeted gene profiling.
Song D; Li K; Hemminger Z; Wollman R; Li JJ
Bioinformatics; 2021 Jul; 37(Suppl_1):i358-i366. PubMed ID: 34252925
[TBL] [Abstract][Full Text] [Related]
16. spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data.
Bae S; Choi H; Lee DS
Genome Med; 2023 Mar; 15(1):19. PubMed ID: 36932388
[TBL] [Abstract][Full Text] [Related]
17. SPCS: a spatial and pattern combined smoothing method for spatial transcriptomic expression.
Liu Y; Wang T; Duggan B; Sharpnack M; Huang K; Zhang J; Ye X; Johnson TS
Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35380614
[TBL] [Abstract][Full Text] [Related]
18. Spatially informed cell-type deconvolution for spatial transcriptomics.
Ma Y; Zhou X
Nat Biotechnol; 2022 Sep; 40(9):1349-1359. PubMed ID: 35501392
[TBL] [Abstract][Full Text] [Related]
19. stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies.
Ji G; Tang Q; Zhu S; Zhu J; Ye P; Xia S; Wu X
Genomics Proteomics Bioinformatics; 2023 Jun; 21(3):601-618. PubMed ID: 36669641
[TBL] [Abstract][Full Text] [Related]
20. Large-Scale Integration of Single-Cell RNA-Seq Data Reveals Astrocyte Diversity and Transcriptomic Modules across Six Central Nervous System Disorders.
Qian Z; Qin J; Lai Y; Zhang C; Zhang X
Biomolecules; 2023 Apr; 13(4):. PubMed ID: 37189441
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
