158 related articles for article (PubMed ID: 37228014)
1. Pygenomics: manipulating genomic intervals and data files in Python.
Tamazian G; Cherkasov N; Kanapin A; Samsonova A
Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37228014
[TBL] [Abstract][Full Text] [Related]
2. Bioframe: operations on genomic intervals in Pandas dataframes.
; Abdennur N; Fudenberg G; Flyamer IM; Galitsyna AA; Goloborodko A; Imakaev M; Venev S
Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38402507
[TBL] [Abstract][Full Text] [Related]
3. Gonomics: uniting high performance and readability for genomics with Go.
Au EH; Fauci C; Luo Y; Mangan RJ; Snellings DA; Shoben CR; Weaver S; Simpson SK; Lowe CB
Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37624924
[TBL] [Abstract][Full Text] [Related]
4. PyRanges: efficient comparison of genomic intervals in Python.
Stovner EB; Sætrom P
Bioinformatics; 2020 Feb; 36(3):918-919. PubMed ID: 31373614
[TBL] [Abstract][Full Text] [Related]
5. Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties.
Bergstrand LH; Neufeld JD; Doxey AC
Bioinformatics; 2019 Dec; 35(23):5063-5065. PubMed ID: 31240307
[TBL] [Abstract][Full Text] [Related]
6. Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.
Dale RK; Pedersen BS; Quinlan AR
Bioinformatics; 2011 Dec; 27(24):3423-4. PubMed ID: 21949271
[TBL] [Abstract][Full Text] [Related]
7. Explore, edit and leverage genomic annotations using Python GTF toolkit.
Lopez F; Charbonnier G; Kermezli Y; Belhocine M; Ferré Q; Zweig N; Aribi M; Gonzalez A; Spicuglia S; Puthier D
Bioinformatics; 2019 Sep; 35(18):3487-3488. PubMed ID: 30768152
[TBL] [Abstract][Full Text] [Related]
8. A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank.
Smelter A; Astra M; Moseley HN
BMC Bioinformatics; 2017 Mar; 18(1):175. PubMed ID: 28302053
[TBL] [Abstract][Full Text] [Related]
9. A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository.
Smelter A; Moseley HNB
Metabolomics; 2018; 14(5):64. PubMed ID: 29706851
[TBL] [Abstract][Full Text] [Related]
10. Gos: a declarative library for interactive genomics visualization in Python.
Manz T; L'Yi S; Gehlenborg N
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36688709
[TBL] [Abstract][Full Text] [Related]
11. kegg_pull: a software package for the RESTful access and pulling from the Kyoto Encyclopedia of Gene and Genomes.
Huckvale E; Moseley HNB
BMC Bioinformatics; 2023 Mar; 24(1):78. PubMed ID: 36870946
[TBL] [Abstract][Full Text] [Related]
12. JBrowse Jupyter: a Python interface to JBrowse 2.
De Jesus Martinez T; Hershberg EA; Guo E; Stevens GJ; Diesh C; Xie P; Bridge C; Cain S; Haw R; Buels RM; Stein LD; Holmes IH
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36648320
[TBL] [Abstract][Full Text] [Related]
13. DendroPy: a Python library for phylogenetic computing.
Sukumaran J; Holder MT
Bioinformatics; 2010 Jun; 26(12):1569-71. PubMed ID: 20421198
[TBL] [Abstract][Full Text] [Related]
14. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
[TBL] [Abstract][Full Text] [Related]
15. GAD: A Python Script for Dividing Genome Annotation Files into Feature-Based Files.
Yasser N; Karam A
Interdiscip Sci; 2020 Sep; 12(3):377-381. PubMed ID: 32524530
[TBL] [Abstract][Full Text] [Related]
16. IOData: A python library for reading, writing, and converting computational chemistry file formats and generating input files.
Verstraelen T; Adams W; Pujal L; Tehrani A; Kelly BD; Macaya L; Meng F; Richer M; Hernández-Esparza R; Yang XD; Chan M; Kim TD; Cools-Ceuppens M; Chuiko V; Vöhringer-Martinez E; Ayers PW; Heidar-Zadeh F
J Comput Chem; 2021 Mar; 42(6):458-464. PubMed ID: 33368350
[TBL] [Abstract][Full Text] [Related]
17. Biotite: a unifying open source computational biology framework in Python.
Kunzmann P; Hamacher K
BMC Bioinformatics; 2018 Oct; 19(1):346. PubMed ID: 30285630
[TBL] [Abstract][Full Text] [Related]
18. glypy: An Open Source Glycoinformatics Library.
Klein J; Zaia J
J Proteome Res; 2019 Sep; 18(9):3532-3537. PubMed ID: 31310539
[TBL] [Abstract][Full Text] [Related]
19. Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the
Kaleb K; Vesztrocy AW; Altenhoff A; Dessimoz C
F1000Res; 2019; 8():42. PubMed ID: 31001419
[TBL] [Abstract][Full Text] [Related]
20. GReNaDIne: A Data-Driven Python Library to Infer Gene Regulatory Networks from Gene Expression Data.
Schmitt P; Sorin B; Frouté T; Parisot N; Calevro F; Peignier S
Genes (Basel); 2023 Jan; 14(2):. PubMed ID: 36833196
[No Abstract] [Full Text] [Related]
[Next] [New Search]