260 related articles for article (PubMed ID: 37258866)
1. Recovery and Analysis of Long-Read Metagenome-Assembled Genomes.
Arumugam K; Bessarab I; Haryono MAS; Williams RBH
Methods Mol Biol; 2023; 2649():235-259. PubMed ID: 37258866
[TBL] [Abstract][Full Text] [Related]
2. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
3. Benchmarking genome assembly methods on metagenomic sequencing data.
Zhang Z; Yang C; Veldsman WP; Fang X; Zhang L
Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36917471
[TBL] [Abstract][Full Text] [Related]
4. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
5. Improved Assembly of Metagenome-Assembled Genomes and Viruses in Tibetan Saline Lake Sediment by HiFi Metagenomic Sequencing.
Tao Y; Xun F; Zhao C; Mao Z; Li B; Xing P; Wu QL
Microbiol Spectr; 2023 Feb; 11(1):e0332822. PubMed ID: 36475839
[TBL] [Abstract][Full Text] [Related]
6. Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing.
Chen Z; Grim CJ; Ramachandran P; Meng J
Microbiol Spectr; 2024 Jun; 12(6):e0011724. PubMed ID: 38687063
[TBL] [Abstract][Full Text] [Related]
7. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS
BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070
[TBL] [Abstract][Full Text] [Related]
8. Unveiling microbial diversity: harnessing long-read sequencing technology.
Agustinho DP; Fu Y; Menon VK; Metcalf GA; Treangen TJ; Sedlazeck FJ
Nat Methods; 2024 Jun; 21(6):954-966. PubMed ID: 38689099
[TBL] [Abstract][Full Text] [Related]
9. Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces.
Cuscó A; Pérez D; Viñes J; Fàbregas N; Francino O
BMC Genomics; 2021 May; 22(1):330. PubMed ID: 33957869
[TBL] [Abstract][Full Text] [Related]
10. Genome-resolved metagenomics using environmental and clinical samples.
Kayani MUR; Huang W; Feng R; Chen L
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33758906
[TBL] [Abstract][Full Text] [Related]
11. Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
Somerville V; Lutz S; Schmid M; Frei D; Moser A; Irmler S; Frey JE; Ahrens CH
BMC Microbiol; 2019 Jun; 19(1):143. PubMed ID: 31238873
[TBL] [Abstract][Full Text] [Related]
12. Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes.
Patin NV; Goodwin KD
mSystems; 2022 Dec; 7(6):e0059522. PubMed ID: 36448813
[TBL] [Abstract][Full Text] [Related]
13. Assembly methods for nanopore-based metagenomic sequencing: a comparative study.
Latorre-Pérez A; Villalba-Bermell P; Pascual J; Vilanova C
Sci Rep; 2020 Aug; 10(1):13588. PubMed ID: 32788623
[TBL] [Abstract][Full Text] [Related]
14. Generation and application of pseudo-long reads for metagenome assembly.
Sim M; Lee J; Wy S; Park N; Lee D; Kwon D; Kim J
Gigascience; 2022 May; 11():. PubMed ID: 35579554
[TBL] [Abstract][Full Text] [Related]
15. Dancing the Nanopore limbo - Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction.
Simon SA; Schmidt K; Griesdorn L; Soares AR; Bornemann TLV; Probst AJ
BMC Genomics; 2023 Dec; 24(1):727. PubMed ID: 38041056
[TBL] [Abstract][Full Text] [Related]
16. Benchmarking second and third-generation sequencing platforms for microbial metagenomics.
Meslier V; Quinquis B; Da Silva K; Plaza Oñate F; Pons N; Roume H; Podar M; Almeida M
Sci Data; 2022 Nov; 9(1):694. PubMed ID: 36369227
[TBL] [Abstract][Full Text] [Related]
17. Recovering metagenome-assembled genomes from shotgun metagenomic sequencing data: Methods, applications, challenges, and opportunities.
Zhou Y; Liu M; Yang J
Microbiol Res; 2022 Jul; 260():127023. PubMed ID: 35430490
[TBL] [Abstract][Full Text] [Related]
18. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
[TBL] [Abstract][Full Text] [Related]
19. Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing.
Singleton CM; Petriglieri F; Kristensen JM; Kirkegaard RH; Michaelsen TY; Andersen MH; Kondrotaite Z; Karst SM; Dueholm MS; Nielsen PH; Albertsen M
Nat Commun; 2021 Mar; 12(1):2009. PubMed ID: 33790294
[TBL] [Abstract][Full Text] [Related]
20. Novel canine high-quality metagenome-assembled genomes, prophages and host-associated plasmids provided by long-read metagenomics together with Hi-C proximity ligation.
Cuscó A; Pérez D; Viñes J; Fàbregas N; Francino O
Microb Genom; 2022 Mar; 8(3):. PubMed ID: 35298370
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
