241 related articles for article (PubMed ID: 37280210)
1. Chromatin alternates between A and B compartments at kilobase scale for subgenic organization.
Harris HL; Gu H; Olshansky M; Wang A; Farabella I; Eliaz Y; Kalluchi A; Krishna A; Jacobs M; Cauer G; Pham M; Rao SSP; Dudchenko O; Omer A; Mohajeri K; Kim S; Nichols MH; Davis ES; Gkountaroulis D; Udupa D; Aiden AP; Corces VG; Phanstiel DH; Noble WS; Nir G; Di Pierro M; Seo JS; Talkowski ME; Aiden EL; Rowley MJ
Nat Commun; 2023 Jun; 14(1):3303. PubMed ID: 37280210
[TBL] [Abstract][Full Text] [Related]
2. Acute depletion of CTCF directly affects MYC regulation through loss of enhancer-promoter looping.
Hyle J; Zhang Y; Wright S; Xu B; Shao Y; Easton J; Tian L; Feng R; Xu P; Li C
Nucleic Acids Res; 2019 Jul; 47(13):6699-6713. PubMed ID: 31127282
[TBL] [Abstract][Full Text] [Related]
3. Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression.
Vos ESM; Valdes-Quezada C; Huang Y; Allahyar A; Verstegen MJAM; Felder AK; van der Vegt F; Uijttewaal ECH; Krijger PHL; de Laat W
Mol Cell; 2021 Aug; 81(15):3082-3095.e6. PubMed ID: 34197738
[TBL] [Abstract][Full Text] [Related]
4. Three-dimensional genome architectural CCCTC-binding factor makes choice in duplicated enhancers at Pcdhα locus.
Wu Y; Jia Z; Ge X; Wu Q
Sci China Life Sci; 2020 Jun; 63(6):835-844. PubMed ID: 32249388
[TBL] [Abstract][Full Text] [Related]
5. Building regulatory landscapes reveals that an enhancer can recruit cohesin to create contact domains, engage CTCF sites and activate distant genes.
Rinzema NJ; Sofiadis K; Tjalsma SJD; Verstegen MJAM; Oz Y; Valdes-Quezada C; Felder AK; Filipovska T; van der Elst S; de Andrade Dos Ramos Z; Han R; Krijger PHL; de Laat W
Nat Struct Mol Biol; 2022 Jun; 29(6):563-574. PubMed ID: 35710842
[TBL] [Abstract][Full Text] [Related]
6. Multiple CTCF sites cooperate with each other to maintain a TAD for enhancer-promoter interaction in the β-globin locus.
Kang J; Kim YW; Park S; Kang Y; Kim A
FASEB J; 2021 Aug; 35(8):e21768. PubMed ID: 34245617
[TBL] [Abstract][Full Text] [Related]
7. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS; Huntley MH; Durand NC; Stamenova EK; Bochkov ID; Robinson JT; Sanborn AL; Machol I; Omer AD; Lander ES; Aiden EL
Cell; 2014 Dec; 159(7):1665-80. PubMed ID: 25497547
[TBL] [Abstract][Full Text] [Related]
8. CTCF shapes chromatin structure and gene expression in health and disease.
Dehingia B; Milewska M; Janowski M; Pękowska A
EMBO Rep; 2022 Sep; 23(9):e55146. PubMed ID: 35993175
[TBL] [Abstract][Full Text] [Related]
9. Defining genome architecture at base-pair resolution.
Hua P; Badat M; Hanssen LLP; Hentges LD; Crump N; Downes DJ; Jeziorska DM; Oudelaar AM; Schwessinger R; Taylor S; Milne TA; Hughes JR; Higgs DR; Davies JOJ
Nature; 2021 Jul; 595(7865):125-129. PubMed ID: 34108683
[TBL] [Abstract][Full Text] [Related]
10. CTCF: the protein, the binding partners, the binding sites and their chromatin loops.
Holwerda SJ; de Laat W
Philos Trans R Soc Lond B Biol Sci; 2013; 368(1620):20120369. PubMed ID: 23650640
[TBL] [Abstract][Full Text] [Related]
11. Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding.
Hsieh TS; Cattoglio C; Slobodyanyuk E; Hansen AS; Rando OJ; Tjian R; Darzacq X
Mol Cell; 2020 May; 78(3):539-553.e8. PubMed ID: 32213323
[TBL] [Abstract][Full Text] [Related]
12. Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation.
Kubo N; Ishii H; Xiong X; Bianco S; Meitinger F; Hu R; Hocker JD; Conte M; Gorkin D; Yu M; Li B; Dixon JR; Hu M; Nicodemi M; Zhao H; Ren B
Nat Struct Mol Biol; 2021 Feb; 28(2):152-161. PubMed ID: 33398174
[TBL] [Abstract][Full Text] [Related]
13. YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment.
Beagan JA; Duong MT; Titus KR; Zhou L; Cao Z; Ma J; Lachanski CV; Gillis DR; Phillips-Cremins JE
Genome Res; 2017 Jul; 27(7):1139-1152. PubMed ID: 28536180
[TBL] [Abstract][Full Text] [Related]
14. Genomic Marks Associated with Chromatin Compartments in the CTCF, RNAPII Loop and Genomic Windows.
Szczepińska T; Mollah AF; Plewczynski D
Int J Mol Sci; 2021 Oct; 22(21):. PubMed ID: 34769020
[TBL] [Abstract][Full Text] [Related]
15. Dissecting CTCF site function in a tense HoxD locus.
Bruneau BG
Genes Dev; 2021 Nov; 35(21-22):1401-1402. PubMed ID: 34725128
[TBL] [Abstract][Full Text] [Related]
16. Enhancer-promoter contact formation requires RNAPII and antagonizes loop extrusion.
Zhang S; Übelmesser N; Barbieri M; Papantonis A
Nat Genet; 2023 May; 55(5):832-840. PubMed ID: 37012454
[TBL] [Abstract][Full Text] [Related]
17. Enhancer-promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness.
Chakraborty S; Kopitchinski N; Zuo Z; Eraso A; Awasthi P; Chari R; Mitra A; Tobias IC; Moorthy SD; Dale RK; Mitchell JA; Petros TJ; Rocha PP
Nat Genet; 2023 Feb; 55(2):280-290. PubMed ID: 36717694
[TBL] [Abstract][Full Text] [Related]
18. Coming full circle: On the origin and evolution of the looping model for enhancer-promoter communication.
Popay TM; Dixon JR
J Biol Chem; 2022 Aug; 298(8):102117. PubMed ID: 35691341
[TBL] [Abstract][Full Text] [Related]
19. Loop competition and extrusion model predicts CTCF interaction specificity.
Xi W; Beer MA
Nat Commun; 2021 Feb; 12(1):1046. PubMed ID: 33594051
[TBL] [Abstract][Full Text] [Related]
20. The structural and functional roles of CTCF in the regulation of cell type-specific and human disease-associated super-enhancers.
Shin HY
Genes Genomics; 2019 Mar; 41(3):257-265. PubMed ID: 30456521
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
