177 related articles for article (PubMed ID: 37291427)
1. High-throughput RNA isoform sequencing using programmed cDNA concatenation.
Al'Khafaji AM; Smith JT; Garimella KV; Babadi M; Popic V; Sade-Feldman M; Gatzen M; Sarkizova S; Schwartz MA; Blaum EM; Day A; Costello M; Bowers T; Gabriel S; Banks E; Philippakis AA; Boland GM; Blainey PC; Hacohen N
Nat Biotechnol; 2024 Apr; 42(4):582-586. PubMed ID: 37291427
[TBL] [Abstract][Full Text] [Related]
2. Full-length isoform concatenation sequencing to resolve cancer transcriptome complexity.
Wijeratne S; Gonzalez MEH; Roach K; Miller KE; Schieffer KM; Fitch JR; Leonard J; White P; Kelly BJ; Cottrell CE; Mardis ER; Wilson RK; Miller AR
BMC Genomics; 2024 Jan; 25(1):122. PubMed ID: 38287261
[TBL] [Abstract][Full Text] [Related]
3. Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing.
Begik O; Diensthuber G; Liu H; Delgado-Tejedor A; Kontur C; Niazi AM; Valen E; Giraldez AJ; Beaudoin JD; Mattick JS; Novoa EM
Nat Methods; 2023 Jan; 20(1):75-85. PubMed ID: 36536091
[TBL] [Abstract][Full Text] [Related]
4. Long read isoform sequencing reveals hidden transcriptional complexity between cattle subspecies.
Ren Y; Tseng E; Smith TPL; Hiendleder S; Williams JL; Low WY
BMC Genomics; 2023 Mar; 24(1):108. PubMed ID: 36915055
[TBL] [Abstract][Full Text] [Related]
5. High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing.
Shi ZX; Chen ZC; Zhong JY; Hu KH; Zheng YF; Chen Y; Xie SQ; Bo XC; Luo F; Tang C; Xiao CL; Liu YZ
Nat Commun; 2023 May; 14(1):2631. PubMed ID: 37149708
[TBL] [Abstract][Full Text] [Related]
6. Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA.
Volden R; Palmer T; Byrne A; Cole C; Schmitz RJ; Green RE; Vollmers C
Proc Natl Acad Sci U S A; 2018 Sep; 115(39):9726-9731. PubMed ID: 30201725
[TBL] [Abstract][Full Text] [Related]
7. Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules.
Sessegolo C; Cruaud C; Da Silva C; Cologne A; Dubarry M; Derrien T; Lacroix V; Aury JM
Sci Rep; 2019 Oct; 9(1):14908. PubMed ID: 31624302
[TBL] [Abstract][Full Text] [Related]
8. Transcript Profiling Using Long-Read Sequencing Technologies.
Bayega A; Wang YC; Oikonomopoulos S; Djambazian H; Fahiminiya S; Ragoussis J
Methods Mol Biol; 2018; 1783():121-147. PubMed ID: 29767360
[TBL] [Abstract][Full Text] [Related]
9. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
[TBL] [Abstract][Full Text] [Related]
10. A
Ramberg S; Høyheim B; Østbye TK; Andreassen R
Front Genet; 2021; 12():656334. PubMed ID: 33986770
[TBL] [Abstract][Full Text] [Related]
11. Transcript Identification Through Long-Read Sequencing.
Seki M; Oka M; Xu L; Suzuki A; Suzuki Y
Methods Mol Biol; 2021; 2284():531-541. PubMed ID: 33835462
[TBL] [Abstract][Full Text] [Related]
12. Improving RNA-Seq expression estimation by modeling isoform- and exon-specific read sequencing rate.
Liu X; Shi X; Chen C; Zhang L
BMC Bioinformatics; 2015 Oct; 16():332. PubMed ID: 26475308
[TBL] [Abstract][Full Text] [Related]
13. A global survey of the transcriptome of allopolyploid Brassica napus based on single-molecule long-read isoform sequencing and Illumina-based RNA sequencing data.
Yao S; Liang F; Gill RA; Huang J; Cheng X; Liu Y; Tong C; Liu S
Plant J; 2020 Jul; 103(2):843-857. PubMed ID: 32270540
[TBL] [Abstract][Full Text] [Related]
14. PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.
Zhang G; Sun M; Wang J; Lei M; Li C; Zhao D; Huang J; Li W; Li S; Li J; Yang J; Luo Y; Hu S; Zhang B
Plant J; 2019 Jan; 97(2):296-305. PubMed ID: 30288819
[TBL] [Abstract][Full Text] [Related]
15. Identification of Protein Isoforms Using Reference Databases Built from Long and Short Read RNA-Sequencing.
Tay AP; Hamey JJ; Martyn GE; Wilson LOW; Wilkins MR
J Proteome Res; 2022 Jul; 21(7):1628-1639. PubMed ID: 35612954
[TBL] [Abstract][Full Text] [Related]
16. Poly(A) capture full length cDNA sequencing improves the accuracy and detection ability of transcript quantification and alternative splicing events.
Ura H; Togi S; Niida Y
Sci Rep; 2022 Jun; 12(1):10599. PubMed ID: 35732903
[TBL] [Abstract][Full Text] [Related]
17. ISOdb: A Comprehensive Database of Full-Length Isoforms Generated by Iso-Seq.
Xie SQ; Han Y; Chen XZ; Cao TY; Ji KK; Zhu J; Ling P; Xiao CL
Int J Genomics; 2018; 2018():9207637. PubMed ID: 30581839
[TBL] [Abstract][Full Text] [Related]
18. Exploring differential exon usage via short- and long-read RNA sequencing strategies.
Leshkowitz D; Kedmi M; Fried Y; Pilzer D; Keren-Shaul H; Ainbinder E; Dassa B
Open Biol; 2022 Sep; 12(9):220206. PubMed ID: 36168804
[TBL] [Abstract][Full Text] [Related]
19. Tracking Alternatively Spliced Isoforms from Long Reads by SpliceHunter.
Kuang Z; Canzar S
Methods Mol Biol; 2018; 1751():73-88. PubMed ID: 29508290
[TBL] [Abstract][Full Text] [Related]
20. RNA sequencing and quantitation using the Helicos Genetic Analysis System.
Raz T; Causey M; Jones DR; Kieu A; Letovsky S; Lipson D; Thayer E; Thompson JF; Milos PM
Methods Mol Biol; 2011; 733():37-49. PubMed ID: 21431761
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
