176 related articles for article (PubMed ID: 37309413)
1. Successes and Struggles with Computational Reproducibility: Lessons from the Fragile Families Challenge.
Liu DM; Salganik MJ
Socius; 2019; 5():. PubMed ID: 37309413
[TBL] [Abstract][Full Text] [Related]
2. CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications.
Alessandri S; Ratto ML; Rabellino S; Piacenti G; Contaldo SG; Pernice S; Beccuti M; Calogero RA; Alessandri L
BMC Bioinformatics; 2024 Mar; 25(1):110. PubMed ID: 38475691
[TBL] [Abstract][Full Text] [Related]
3. BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers.
Bai J; Bandla C; Guo J; Vera Alvarez R; Bai M; Vizcaíno JA; Moreno P; Grüning B; Sallou O; Perez-Riverol Y
J Proteome Res; 2021 Apr; 20(4):2056-2061. PubMed ID: 33625229
[TBL] [Abstract][Full Text] [Related]
4. Validating the knowledge bank approach for personalized prediction of survival in acute myeloid leukemia: a reproducibility study.
Xu Y; Mansmann U
Hum Genet; 2022 Sep; 141(9):1467-1480. PubMed ID: 35429300
[TBL] [Abstract][Full Text] [Related]
5. CyVerse for Reproducible Research: RNA-Seq Analysis.
Williams J
Methods Mol Biol; 2022; 2443():57-79. PubMed ID: 35037200
[TBL] [Abstract][Full Text] [Related]
6. The NCI Imaging Data Commons as a platform for reproducible research in computational pathology.
Schacherer DP; Herrmann MD; Clunie DA; Höfener H; Clifford W; Longabaugh WJR; Pieper S; Kikinis R; Fedorov A; Homeyer A
Comput Methods Programs Biomed; 2023 Dec; 242():107839. PubMed ID: 37832430
[TBL] [Abstract][Full Text] [Related]
7. APRICOT: Advanced Platform for Reproducible Infrastructures in the Cloud via Open Tools.
Giménez-Alventosa V; Segrelles JD; Moltó G; Roca-Sogorb M
Methods Inf Med; 2020 Dec; 59(S 02):e33-e45. PubMed ID: 32777825
[TBL] [Abstract][Full Text] [Related]
8. PhenoMeNal: processing and analysis of metabolomics data in the cloud.
Peters K; Bradbury J; Bergmann S; Capuccini M; Cascante M; de Atauri P; Ebbels TMD; Foguet C; Glen R; Gonzalez-Beltran A; Günther UL; Handakas E; Hankemeier T; Haug K; Herman S; Holub P; Izzo M; Jacob D; Johnson D; Jourdan F; Kale N; Karaman I; Khalili B; Emami Khonsari P; Kultima K; Lampa S; Larsson A; Ludwig C; Moreno P; Neumann S; Novella JA; O'Donovan C; Pearce JTM; Peluso A; Piras ME; Pireddu L; Reed MAC; Rocca-Serra P; Roger P; Rosato A; Rueedi R; Ruttkies C; Sadawi N; Salek RM; Sansone SA; Selivanov V; Spjuth O; Schober D; Thévenot EA; Tomasoni M; van Rijswijk M; van Vliet M; Viant MR; Weber RJM; Zanetti G; Steinbeck C
Gigascience; 2019 Feb; 8(2):. PubMed ID: 30535405
[TBL] [Abstract][Full Text] [Related]
9. Building Portable and Reproducible Cancer Informatics Workflows: An RNA Sequencing Case Study.
Kaushik G; Davis-Dusenbery B
Methods Mol Biol; 2019; 1878():39-64. PubMed ID: 30378068
[TBL] [Abstract][Full Text] [Related]
10. Scalable Workflows and Reproducible Data Analysis for Genomics.
Strozzi F; Janssen R; Wurmus R; Crusoe MR; Githinji G; Di Tommaso P; Belhachemi D; Möller S; Smant G; de Ligt J; Prins P
Methods Mol Biol; 2019; 1910():723-745. PubMed ID: 31278683
[TBL] [Abstract][Full Text] [Related]
11. The future of Cochrane Neonatal.
Soll RF; Ovelman C; McGuire W
Early Hum Dev; 2020 Nov; 150():105191. PubMed ID: 33036834
[TBL] [Abstract][Full Text] [Related]
12. Open science, reproducibility, and transparency in ecology.
Powers SM; Hampton SE
Ecol Appl; 2019 Jan; 29(1):e01822. PubMed ID: 30362295
[TBL] [Abstract][Full Text] [Related]
13. Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection.
Ohta T; Tanjo T; Ogasawara O
Gigascience; 2019 Apr; 8(4):. PubMed ID: 31222199
[TBL] [Abstract][Full Text] [Related]
14. The case for free and open source software in research and scholarship.
Fortunato L; Galassi M
Philos Trans A Math Phys Eng Sci; 2021 May; 379(2197):20200079. PubMed ID: 33775148
[TBL] [Abstract][Full Text] [Related]
15. Reproducibility of computational workflows is automated using continuous analysis.
Beaulieu-Jones BK; Greene CS
Nat Biotechnol; 2017 Apr; 35(4):342-346. PubMed ID: 28288103
[TBL] [Abstract][Full Text] [Related]
16. NPARS-A Novel Approach to Address Accuracy and Reproducibility in Genomic Data Science.
Ma L; Peterson EA; Shin IJ; Muesse J; Marino K; Steliga MA; Johann DJ
Front Big Data; 2021; 4():725095. PubMed ID: 34647017
[No Abstract] [Full Text] [Related]
17. Learning from reproducing computational results: introducing three principles and the
Krafczyk MS; Shi A; Bhaskar A; Marinov D; Stodden V
Philos Trans A Math Phys Eng Sci; 2021 May; 379(2197):20200069. PubMed ID: 33775145
[TBL] [Abstract][Full Text] [Related]
18. Singularity: Scientific containers for mobility of compute.
Kurtzer GM; Sochat V; Bauer MW
PLoS One; 2017; 12(5):e0177459. PubMed ID: 28494014
[TBL] [Abstract][Full Text] [Related]
19. Google-Accelerated Biomolecular Simulations.
Kohlhoff KJ
Methods Mol Biol; 2019; 2022():291-309. PubMed ID: 31396908
[TBL] [Abstract][Full Text] [Related]
20. Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines.
Kulkarni N; Alessandrì L; Panero R; Arigoni M; Olivero M; Ferrero G; Cordero F; Beccuti M; Calogero RA
BMC Bioinformatics; 2018 Oct; 19(Suppl 10):349. PubMed ID: 30367595
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
