301 related articles for article (PubMed ID: 37322109)
1. A complete telomere-to-telomere assembly of the maize genome.
Chen J; Wang Z; Tan K; Huang W; Shi J; Li T; Hu J; Wang K; Wang C; Xin B; Zhao H; Song W; Hufford MB; Schnable JC; Jin W; Lai J
Nat Genet; 2023 Jul; 55(7):1221-1231. PubMed ID: 37322109
[TBL] [Abstract][Full Text] [Related]
2. Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
Hotaling S; Wilcox ER; Heckenhauer J; Stewart RJ; Frandsen PB
BMC Genomics; 2023 Mar; 24(1):117. PubMed ID: 36927511
[TBL] [Abstract][Full Text] [Related]
3. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore.
Lang D; Zhang S; Ren P; Liang F; Sun Z; Meng G; Tan Y; Li X; Lai Q; Han L; Wang D; Hu F; Wang W; Liu S
Gigascience; 2020 Dec; 9(12):. PubMed ID: 33319909
[TBL] [Abstract][Full Text] [Related]
4. NextPolish2: A Repeat-aware Polishing Tool for Genomes Assembled Using HiFi Long Reads.
Hu J; Wang Z; Liang F; Liu SL; Ye K; Wang DP
Genomics Proteomics Bioinformatics; 2024 May; 22(1):. PubMed ID: 38862426
[TBL] [Abstract][Full Text] [Related]
5. Gapless assembly of maize chromosomes using long-read technologies.
Liu J; Seetharam AS; Chougule K; Ou S; Swentowsky KW; Gent JI; Llaca V; Woodhouse MR; Manchanda N; Presting GG; Kudrna DA; Alabady M; Hirsch CN; Fengler KA; Ware D; Michael TP; Hufford MB; Dawe RK
Genome Biol; 2020 May; 21(1):121. PubMed ID: 32434565
[TBL] [Abstract][Full Text] [Related]
6. NPGREAT: assembly of human subtelomere regions with the use of ultralong nanopore reads and linked-reads.
Adam E; Ranjan D; Riethman H
BMC Bioinformatics; 2022 Dec; 23(1):545. PubMed ID: 36526983
[TBL] [Abstract][Full Text] [Related]
7. Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads.
Du H; Liang C
Nat Commun; 2019 Nov; 10(1):5360. PubMed ID: 31767853
[TBL] [Abstract][Full Text] [Related]
8. Unbiased K-mer Analysis Reveals Changes in Copy Number of Highly Repetitive Sequences During Maize Domestication and Improvement.
Liu S; Zheng J; Migeon P; Ren J; Hu Y; He C; Liu H; Fu J; White FF; Toomajian C; Wang G
Sci Rep; 2017 Feb; 7():42444. PubMed ID: 28186206
[TBL] [Abstract][Full Text] [Related]
9. Use of a
Hoyer LL; Freeman BA; Hogan EK; Hernandez AG
Front Cell Infect Microbiol; 2024; 14():1329438. PubMed ID: 38362496
[No Abstract] [Full Text] [Related]
10. Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.
Faino L; Seidl MF; Datema E; van den Berg GC; Janssen A; Wittenberg AH; Thomma BP
mBio; 2015 Aug; 6(4):. PubMed ID: 26286689
[TBL] [Abstract][Full Text] [Related]
11. Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
Ou S; Liu J; Chougule KM; Fungtammasan A; Seetharam AS; Stein JC; Llaca V; Manchanda N; Gilbert AM; Wei S; Chin CS; Hufnagel DE; Pedersen S; Snodgrass SJ; Fengler K; Woodhouse M; Walenz BP; Koren S; Phillippy AM; Hannigan BT; Dawe RK; Hirsch CN; Hufford MB; Ware D
Nat Commun; 2020 May; 11(1):2288. PubMed ID: 32385271
[TBL] [Abstract][Full Text] [Related]
12. Stable centromere positioning in diverse sequence contexts of complex and satellite centromeres of maize and wild relatives.
Gent JI; Wang N; Dawe RK
Genome Biol; 2017 Jun; 18(1):121. PubMed ID: 28637491
[TBL] [Abstract][Full Text] [Related]
13. Prospects of telomere-to-telomere assembly in barley: Analysis of sequence gaps in the MorexV3 reference genome.
Navrátilová P; Toegelová H; Tulpová Z; Kuo YT; Stein N; Doležel J; Houben A; Šimková H; Mascher M
Plant Biotechnol J; 2022 Jul; 20(7):1373-1386. PubMed ID: 35338551
[TBL] [Abstract][Full Text] [Related]
14. Comparison of Long-Read Methods for Sequencing and Assembly of Lepidopteran Pest Genomes.
Zhang T; Xing W; Wang A; Zhang N; Jia L; Ma S; Xia Q
Int J Mol Sci; 2022 Dec; 24(1):. PubMed ID: 36614092
[TBL] [Abstract][Full Text] [Related]
15. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
Goldstein S; Beka L; Graf J; Klassen JL
BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
[TBL] [Abstract][Full Text] [Related]
16. JunctionViewer: customizable annotation software for repeat-rich genomic regions.
Wolfgruber TK; Presting GG
BMC Bioinformatics; 2010 Jan; 11():23. PubMed ID: 20067643
[TBL] [Abstract][Full Text] [Related]
17. A near-complete genome assembly of Brassica rapa provides new insights into the evolution of centromeres.
Zhang L; Liang J; Chen H; Zhang Z; Wu J; Wang X
Plant Biotechnol J; 2023 May; 21(5):1022-1032. PubMed ID: 36688739
[TBL] [Abstract][Full Text] [Related]
18. Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly.
Frei D; Veekman E; Grogg D; Stoffel-Studer I; Morishima A; Shimizu-Inatsugi R; Yates S; Shimizu KK; Frey JE; Studer B; Copetti D
Genome Biol Evol; 2021 Aug; 13(8):. PubMed ID: 34247248
[TBL] [Abstract][Full Text] [Related]
19. Complete genomic and epigenetic maps of human centromeres.
Altemose N; Logsdon GA; Bzikadze AV; Sidhwani P; Langley SA; Caldas GV; Hoyt SJ; Uralsky L; Ryabov FD; Shew CJ; Sauria MEG; Borchers M; Gershman A; Mikheenko A; Shepelev VA; Dvorkina T; Kunyavskaya O; Vollger MR; Rhie A; McCartney AM; Asri M; Lorig-Roach R; Shafin K; Lucas JK; Aganezov S; Olson D; de Lima LG; Potapova T; Hartley GA; Haukness M; Kerpedjiev P; Gusev F; Tigyi K; Brooks S; Young A; Nurk S; Koren S; Salama SR; Paten B; Rogaev EI; Streets A; Karpen GH; Dernburg AF; Sullivan BA; Straight AF; Wheeler TJ; Gerton JL; Eichler EE; Phillippy AM; Timp W; Dennis MY; O'Neill RJ; Zook JM; Schatz MC; Pevzner PA; Diekhans M; Langley CH; Alexandrov IA; Miga KH
Science; 2022 Apr; 376(6588):eabl4178. PubMed ID: 35357911
[TBL] [Abstract][Full Text] [Related]
20. Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies.
Mc Cartney AM; Shafin K; Alonge M; Bzikadze AV; Formenti G; Fungtammasan A; Howe K; Jain C; Koren S; Logsdon GA; Miga KH; Mikheenko A; Paten B; Shumate A; Soto DC; Sović I; Wood JMD; Zook JM; Phillippy AM; Rhie A
Nat Methods; 2022 Jun; 19(6):687-695. PubMed ID: 35361931
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
